Irina Solovyeva, Angelika Schmuker, Liliana M. Cano, Mireille van Damme, Sebastian Ploch, Sophien Kamoun, Marco Thines (2015)
Evolution of Hyaloperonospora effectors: ATR1 effector homologs from sister species of the downy mildew pathogen H. arabidopsidis are not recognised by RPP1WsB.
Mycological Progress14: .
DOI: 10.1007/s11557-015-1074-7
Stefan Klinter, Vincent Bulone, Lars Arvestad (2019)
Diversity and evolution of chitin synthases in oomycetes (Straminipila: Oomycota).
Molecular Phylogenetics and Evolution139: 106558.
DOI: 10.1016/j.ympev.2019.106558
Mathias Blum, Hannes A. Gamper, Maya Waldner, Helge Sierotzki, Ulrich Gisi (2012)
The cellulose synthase 3 (CesA3) gene of oomycetes: structure, phylogeny and influence on sensitivity to carboxylic acid amide (CAA) fungicides.
Fungal Biology116: 529.
DOI: 10.1016/j.funbio.2012.02.003
Clive Brasier, Bruno Scanu, David Cooke, Thomas Jung (2022)
Phytophthora: an ancient, historic, biologically and structurally cohesive and evolutionarily successful generic concept in need of preservation.
IMA Fungus13: .
DOI: 10.1186/s43008-022-00097-z
Megan A. O'Brien, Ian Misner, Christopher E. Lane (2014)
Mitochondrial Genome Sequences and Comparative Genomics of Achlya hypogyna and Thraustotheca clavata.
Journal of Eukaryotic Microbiology61: 146.
DOI: 10.1111/jeu.12092
Rahul Sharma, Xiaojuan Xia, Liliana M. Cano, Edouard Evangelisti, Eric Kemen, Howard Judelson, Stan Oome, Christine Sambles, D. Johan van den Hoogen, Miloslav Kitner, Joël Klein, Harold J. G. Meijer, Otmar Spring, Joe Win, Reinhard Zipper, Helge B. Bode, Francine Govers, Sophien Kamoun, Sebastian Schornack, David J. Studholme, Guido Van den Ackerveken, Marco Thines (2015)
Genome analyses of the sunflower pathogen Plasmopara halstedii provide insights into effector evolution in downy mildews and Phytophthora
.
BMC Genomics16: .
DOI: 10.1186/s12864-015-1904-7
Treena I. Burgess, Diane White, Keith M. McDougall, Jeff Garnas, William A. Dunstan, Santiago Català, Angus J. Carnegie, Stuart Worboys, David Cahill, Anna-Maria Vettraino, Michael J. C. Stukely, Edward C. Y. Liew, Trudy Paap, Tanay Bose, Duccio Migliorini, Briony Williams, Frances Brigg, Colin Crane, Timothy Rudman, Giles E. St. J. Hardy (2017)
Distribution and diversity of Phytophthora across Australia.
Pacific Conservation Biology23: 150.
DOI: 10.1071/PC16032
Fabian Runge, Beninweck Ndambi, Marco Thines, Sung-Hwan Yun (2012)
Which Morphological Characteristics Are Most Influenced by the Host Matrix in Downy Mildews? A Case Study in Pseudoperonospora cubensis.
PLoS ONE7: e44863.
DOI: 10.1371/journal.pone.0044863
Marco Thines, Sabine Telle, Young-Joon Choi, Yu Pei Tan, Roger G. Shivas (2015)
Baobabopsis, a new genus of graminicolous downy mildews from tropical Australia, with an updated key to the genera of downy mildews.
IMA Fungus6: 483.
DOI: 10.5598/imafungus.2015.06.02.12
Pedro W. Crous, Amy Y. Rossman, M. Catherine Aime, W. Cavan Allen, Treena Burgess, Johannes Z. Groenewald, Lisa A. Castlebury (2021)
Names of Phytopathogenic Fungi: A Practical Guide.
Phytopathology®111: 1500.
DOI: 10.1094/PHYTO-11-20-0512-PER
Xiao Yang, Warren E. Copes, Chuanxue Hong (2014)
Two novel species representing a new clade and cluster of Phytophthora.
Fungal Biology118: 72.
DOI: 10.1016/j.funbio.2013.11.003
Tsvetan R. Bachvaroff, Sebastian G. Gornik, Gregory T. Concepcion, Ross F. Waller, Gregory S. Mendez, J. Casey Lippmeier, Charles F. Delwiche (2014)
Dinoflagellate phylogeny revisited: Using ribosomal proteins to resolve deep branching dinoflagellate clades.
Molecular Phylogenetics and Evolution70: 314.
DOI: 10.1016/j.ympev.2013.10.007
Ruvishika S. Jayawardena, Kevin D. Hyde, Antonio Roberto Gomes de Farias, Chitrabhanu S. Bhunjun, Himashi S. Ferdinandez, Dimuthu S. Manamgoda, Dhanushka Udayanga, Indunil S. Herath, Kasun M. Thambugala, Ishara S. Manawasinghe, Achala J. Gajanayake, Binu C. Samarakoon, Digvijayini Bundhun, Deecksha Gomdola, Naruemon Huanraluek, Ya-ru Sun, Xia Tang, Itthayakorn Promputtha, Marco Thines (2021)
What is a species in fungal plant pathogens?.
Fungal Diversity109: 239.
DOI: 10.1007/s13225-021-00484-8
T. Jung, I. Milenkovi, Y. Balci, J. Janoušek, T. Kudláek, Z.á. Nagy, B. Baharuddin, J. Bakonyi, K.D. Broders, S.O. Cacciola, T.-T. Chang, N.M. Chi, T. Corcobado, A. Cravador, B. Orevi, A. Durán, M. Ferreira, C.-H. Fu, L. Garcia, A. Hieno, H.-H. Ho, C. Hong, M. Junaid, K. Kageyama, T. Kuswinanti, C. Maia, T. Májek, H. Masuya, G. Magnano San Di Lio, B. Mendieta-Araica, N. Nasri, L.S.S. Oliveira, A. Pane, A. Pérez-Sierra, A. Rosmana, E. Sanfuentes Von Stowasser, B. Scanu, R. Singh, Z. Stanivukovi, M. Tarigan, P.Q. Thu, Z. Tomi, M. Tomšovský, S. Uematsu, J.F. Webber, H.-C. Zeng, F.-C. Zheng, C.M. Brasier, M. Horta Jung (2024)
Worldwide forest surveys reveal forty-three new species in Phytophthora major Clade 2 with fundamental implications for the evolution and biogeography of the genus and global plant biosecurity.
Studies in Mycology107: 251.
DOI: 10.3114/sim.2024.107.04
Sophia Callaghan, David Guest (2015)
Globalisation, the founder effect, hybrid Phytophthora species and rapid evolution: new headaches for biosecurity.
Australasian Plant Pathology44: 255.
DOI: 10.1007/s13313-015-0348-5
Marco Thines, Bagdevi Mishra, Sebastian Ploch (2023)
Multigene analyses with a broad sampling in Phytophthora and related genera provide evidence for the monophyly of downy mildews.
Mycological Progress22: .
DOI: 10.1007/s11557-023-01932-2
Marco Thines (2014)
Phylogeny and evolution of plant pathogenic oomycetes—a global overview.
European Journal of Plant Pathology138: 431.
DOI: 10.1007/s10658-013-0366-5
Marco Thines, Young-Joon Choi (2016)
Evolution, Diversity, and Taxonomy of the Peronosporaceae, with Focus on the Genus Peronospora.
Phytopathology®106: 6.
DOI: 10.1094/PHYTO-05-15-0127-RVW
Charley G. P. McCarthy, David A. Fitzpatrick, Aaron P. Mitchell (2017)
Phylogenomic Reconstruction of the Oomycete Phylogeny Derived from 37 Genomes.
mSphere2: .
DOI: 10.1128/mSphere.00095-17
Wenwu Ye, Yang Wang, Danyu Shen, Delong Li, Tianhuizi Pu, Zide Jiang, Zhengguang Zhang, Xiaobo Zheng, Brett M Tyler, Yuanchao Wang (2016)
Sequencing of the Litchi Downy Blight Pathogen Reveals It Is a Phytophthora Species With Downy Mildew-Like Characteristics.
Molecular Plant-Microbe Interactions®29: 573.
DOI: 10.1094/MPMI-03-16-0056-R
Howard S. Judelson (2012)
Dynamics and Innovations within Oomycete Genomes: Insights into Biology, Pathology, and Evolution.
Eukaryotic Cell11: 1304.
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Thomas Jung, Yilmaz Balci, Kirk D. Broders, Ivan Milenković, Josef Janoušek, Tomáš Kudláček, Biljana Đorđević, Marilia Horta Jung (2023)
Synchrospora gen. nov., a New Peronosporaceae Genus with Aerial Lifestyle from a Natural Cloud Forest in Panama.
Journal of Fungi9: 517.
DOI: 10.3390/jof9050517
Michael F. Seidl, Guido Van den Ackerveken, Francine Govers, Berend Snel (2012)
Reconstruction of Oomycete Genome Evolution Identifies Differences in Evolutionary Trajectories Leading to Present-Day Large Gene Families.
Genome Biology and Evolution4: 199.
DOI: 10.1093/gbe/evs003
Marina S. Ascunce, Jose C. Huguet-Tapia, Almudena Ortiz-Urquiza, Nemat O. Keyhani, Edward L. Braun, Erica M. Goss (2017)
Phylogenomic analysis supports multiple instances of polyphyly in the oomycete peronosporalean lineage.
Molecular Phylogenetics and Evolution114: 199.
DOI: 10.1016/j.ympev.2017.06.013
Tyler B. Bourret, Robin A. Choudhury, Heather K. Mehl, Cheryl L. Blomquist, Neil McRoberts, David M. Rizzo, Mark Gijzen (2018)
Multiple origins of downy mildews and mito-nuclear discordance within the paraphyletic genus Phytophthora.
PLOS ONE13: e0192502.
DOI: 10.1371/journal.pone.0192502
Bruno Scanu, Thomas Jung, Hossein Masigol, Benedetto Teodoro Linaldeddu, Marília Horta Jung, Andrea Brandano, Reza Mostowfizadeh-Ghalamfarsa, Josef Janoušek, Mario Riolo, Santa Olga Cacciola (2021)
Phytophthora heterospora sp. nov., a New Pseudoconidia-Producing Sister Species of P. palmivora.
Journal of Fungi7: 870.
DOI: 10.3390/jof7100870
Iryna Matsiakh, Audrius Menkis (2023)
An Overview of Phytophthora Species on Woody Plants in Sweden and Other Nordic Countries.
Microorganisms11: 1309.
DOI: 10.3390/microorganisms11051309
Min Yang, Shengchang Duan, Xinyue Mei, Huichuan Huang, Wei Chen, Yixiang Liu, Cunwu Guo, Ting Yang, Wei Wei, Xili Liu, Xiahong He, Yang Dong, Shusheng Zhu (2018)
The Phytophthora cactorum genome provides insights into the adaptation to host defense compounds and fungicides.
Scientific Reports8: .
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Kyle Fletcher, Richard Michelmore (2023)
Genome-Enabled Insights into Downy Mildew Biology and Evolution.
Annual Review of Phytopathology61: 165.
DOI: 10.1146/annurev-phyto-021622-103440
Gordon W. Beakes, Daiske Honda, Marco Thines (2014)
Systematics and Evolution.
Chapter 3: 39.
DOI: 10.1007/978-3-642-55318-9_3
Gordon W. Beakes, Marco Thines (2017)
Handbook of the Protists.
Chapter 26: 435.
DOI: 10.1007/978-3-319-28149-0_26
John M. McDowell (2014)
Genomics of Plant-Associated Fungi and Oomycetes: Dicot Pathogens.
Chapter 10: 209.
DOI: 10.1007/978-3-662-44056-8_10
Muhammad Rizwan Javed, Abdul Zahir Abbasi, Muhammad Junaid Akhtar, Saira Ghafoor, Muhammad Amin Afzal, Zahid Majeed, Basit Umer (2021)
CRISPR and RNAi Systems.
: 183.
DOI: 10.1016/B978-0-12-821910-2.00025-4