Draft nuclear genome sequence for the plant pathogen, Ceratocystis fimbriata

P. Wilken; Emma Steenkamp; Michael Wingfield; Z. Wilhelm De Beer; Brenda Wingfield

doi:10.5598/imafungus.2013.04.02.14

Magriet A. van der Nest, Wubetu Bihon, Lieschen De Vos, Kershney Naidoo, Danielle Roodt, Enrico Rubagotti, Bernard Slippers, Emma T. Steenkamp, P. Markus Wilken, Andrea Wilson, Michael J. Wingfield, Brenda D. Wingfield (2014)
Draft genome sequences of Diplodia sapinea, Ceratocystis manginecans, and Ceratocystis moniliformis. IMA Fungus 5: 135.

DOI: 10.5598/imafungus.2014.05.01.13

Brenda D. Wingfield, Mike J. Wingfield, Tuan A. Duong (2022)
Molecular basis of cycloheximide resistance in the Ophiostomatales revealed. Current Genetics 68: 505.

DOI: 10.1007/s00294-022-01235-1

W.J. Nel, T.A. Duong, M.J. Wingfield, B.D. Wingfield, A. Hammerbacher, Z.W. de Beer (2018)
Heterothallism revealed in the root rot fungi Berkeleyomyces basicola and B. rouxiae. Fungal Biology 122: 1031.

DOI: 10.1016/j.funbio.2018.08.006

Nicole C Soal, Martin P A Coetzee, Magriet A van der Nest, Almuth Hammerbacher, Brenda D Wingfield, A Rokas (2022)
Phenolic degradation by catechol dioxygenases is associated with pathogenic fungi with a necrotrophic lifestyle in the Ceratocystidaceae. G3 12: .

DOI: 10.1093/g3journal/jkac008

P. Markus Wilken, Emma T. Steenkamp, Michael J. Wingfield, Z. Wilhelm de Beer, Brenda D. Wingfield, Sung-Hwan Yun (2014)
DNA Loss at the Ceratocystis fimbriata Mating Locus Results in Self-Sterility. PLoS ONE 9: e92180.

DOI: 10.1371/journal.pone.0092180

Janneke Aylward, Emma T. Steenkamp, Léanne L. Dreyer, Francois Roets, Brenda D. Wingfield, Michael J. Wingfield (2016)
Genome sequences of Knoxdaviesia capensis and K. proteae (Fungi: Ascomycota) from Protea trees in South Africa. Standards in Genomic Sciences 11: .

DOI: 10.1186/s40793-016-0139-9

Mohammad Sayari, Emma T. Steenkamp, Magriet A. van der Nest, Brenda D. Wingfield (2018)
Diversity and evolution of polyketide biosynthesis gene clusters in the Ceratocystidaceae. Fungal Biology 122: 856.

DOI: 10.1016/j.funbio.2018.04.011

Brenda D. Wingfield, Tuan A. Duong, Almuth Hammerbacher, Magnet A. van der Nest, Andi Wilson, Runlei Chang, Z. Wilhelm de Beer, Emma T. Steenkamp, P. Markus Wilken, Kershney Naidoo, Michael J. Wingfield (2016)
Draft genome sequences for Ceratocystis fagacearum, C. harringtonii, Grosmannia penicillata, and Huntiella bhutanensis. IMA Fungus 7: 317.

DOI: 10.5598/imafungus.2016.07.02.11

Brenda D. Wingfield, Gerald F. Bills, Yang Dong, Wenli Huang, Wilma J. Nel, Benedicta S. Swalarsk-Parry, Niloofar Vaghefi, P. Markus Wilken, Zhiqiang An, Z. Wilhelm de Beer, Lieschen De Vos, Li Chen, Tuan A. Duong, Yun Gao, Almuth Hammerbacher, Julie R. Kikkert, Yan Li, Huiying Li, Kuan Li, Qiang Li, Xingzhong Liu, Xiao Ma, Kershney Naidoo, Sarah J. Pethybridge, Jingzu Sun, Emma T. Steenkamp, Magriet A. van der Nest, Stephanie van Wyk, Michael J. Wingfield, Chuan Xiong, Qun Yue, Xiaoling Zhang (2018)
Draft genome sequence of Annulohypoxylon stygium, Aspergillus mulundensis, Berkeleyomyces basicola (syn. Thielaviopsis basicola), Ceratocystis smalleyi, two Cercospora beticola strains, Coleophoma cylindrospora, Fusarium fracticaudum, Phialophora cf. hyalina, and Morchella septimelata. IMA Fungus 9: 199.

DOI: 10.5598/imafungus.2018.09.01.13

Melissa C. Simpson, Martin P.A. Coetzee, Magriet A. van der Nest, Michael J. Wingfield, Brenda D. Wingfield (2018)
Ceratocystidaceae exhibit high levels of recombination at the mating-type (MAT) locus. Fungal Biology 122: 1184.

DOI: 10.1016/j.funbio.2018.09.003

Magriet A. van der Nest, Lisa A. Beirn, Jo Anne Crouch, Jill E. Demers, Z. Wilhelm de Beer, Lieschen De Vos, Thomas R. Gordon, Jean-Marc Moncalvo, Kershney Naidoo, Santiago Sanchez-Ramirez, Danielle Roodt, Quentin C. Santana, Stephanie L. Slinski, Matt Stata, Stephen J. Taerum, P. Markus Wilken, Andrea M. Wilson, Michael J. Wingfield, Brenda D. Wingfield (2014)
Draft genomes of Amanita jacksonii, Ceratocystis albifundus, Fusarium circinatum, Huntiella omanensis, Leptographium procerum, Rutstroemia sydowiana, and Sclerotinia echinophila. IMA Fungus 5: 472.

DOI: 10.5598/imafungus.2014.05.02.11

Camilo H. Parada-Rojas, Madison Stahr, Kevin L. Childs, Lina M. Quesada-Ocampo (2024)
Effector Repertoire of the Sweetpotato Black Rot Fungal PathogenCeratocystis fimbriata. Molecular Plant-Microbe Interactions® 37: 315.

DOI: 10.1094/MPMI-09-23-0146-FI

Samuel A. Santos, Pedro M.P. Vidigal, Amali Thrimawithana, Blanca M.L. Betancourth, Lúcio M.S. Guimarães, Matthew D. Templeton, Acelino C. Alfenas (2020)
Comparative genomic and transcriptomic analyses reveal different pathogenicity-related genes among three eucalyptus fungal pathogens. Fungal Genetics and Biology 137: 103332.

DOI: 10.1016/j.fgb.2019.103332

Brenda D. Wingfield, Peter K. Ades, Fatima A. Al-Naemi, Lisa A. Beirn, Wubetu Bihon, Jo Anne Crouch, Z. Wilhelm de Beer, Lieschen De Vos, Tuan A. Duong, Christopher J. Fields, Gerda Fourie, Aquillah M. Kanzi, Martha Malapi-Wight, Sarah J. Pethybridge, Osman Radwan, Gloria Rendon, Bernard Slippers, Quentin C. Santana, Emma T. Steenkamp, Paul W. J. Taylor, Niloofar Vaghefi, Nicolaas A. van der Merwe, Daniel Veltri, Michael J. Wingfield (2015)
Draft genome sequences of Chrysoporthe austroafricana, Diplodia scrobiculata, Fusarium nygamai, Leptographium lundbergii, Limonomyces culmigenus, Stagonosporopsis tanaceti, and Thielaviopsis punctulata. IMA Fungus 6: 233.

DOI: 10.5598/imafungus.2015.06.01.15

Le Van Quang, Hoang Van Thang, Dang Thi Kim Anh, Tran Pham Minh Chau, Nguyen Minh Chi (2025)
Canker and wilt diseases in Cinnamomum balansae: identification, pathogenicity and host tolerance. Indian Phytopathology 78: 11.

DOI: 10.1007/s42360-025-00826-5

Abdullah Zubaer, Alvan Wai, Georg Hausner (2018)
The mitochondrial genome of Endoconidiophora resinifera is intron rich. Scientific Reports 8: .

DOI: 10.1038/s41598-018-35926-y

Brenda D. Wingfield, Lieschen De Vos, Andi M. Wilson, Tuan A. Duong, Niloofar Vaghefi, Angela Botes, Ravindra Nath Kharwar, Ramesh Chand, Barsha Poudel, Habibu Aliyu, Martin J. Barbetti, ShuaiFei Chen, Pieter de Maayer, FeiFei Liu, Sudhir Navathe, Shagun Sinha, Emma T. Steenkamp, Hiroyuki Suzuki, Kalonji A. Tshisekedi, Magriet A. van der Nest, Michael J. Wingfield (2022)
IMA Genome - F16. IMA Fungus 13: .

DOI: 10.1186/s43008-022-00089-z

Janneke Aylward, Andi M. Wilson, Cobus M. Visagie, Joseph Spraker, Irene Barnes, Carla Buitendag, Callin Ceriani, Lina Del Mar Angel, Deanné du Plessis, Taygen Fuchs, Katharina Gasser, Daniella Krämer, WenWen Li, Kiara Munsamy, Anja Piso, Jenna-Lee Price, Byron Sonnekus, Chanel Thomas, Ariska van der Nest, Alida van Dijk, Alishia van Heerden, Nicole van Vuuren, Neriman Yilmaz, Tuan A. Duong, Nicolaas A. van der Merwe, Michael J. Wingfield, Brenda D. Wingfield (2024)
IMA Genome – F19. IMA Fungus 15: .

DOI: 10.1186/s43008-024-00142-z

André M. Comeau, Josée Dufour, Guillaume F. Bouvet, Volker Jacobi, Martha Nigg, Bernard Henrissat, Jérôme Laroche, Roger C. Levesque, Louis Bernier (2015)
Functional Annotation of the Ophiostoma novo-ulmi Genome: Insights into the Phytopathogenicity of the Fungal Agent of Dutch Elm Disease. Genome Biology and Evolution 7: 410.

DOI: 10.1093/gbe/evu281

Roy Bogardid Ardón Espinal, Sabrina Ferreira de Santana, Vinícius Castro Santos, Gabriela Nicolle Ramos Lizardo, Raner José Santana Silva, Ronan Xavier Corrêa, Leandro Lopes Loguercio, Aristóteles Góes-Neto, Carlos Priminho Pirovani, Paula Luize Camargos Fonseca, Eric Roberto Guimarães Rocha Aguiar (2023)
Uncovering a Complex Virome Associated with the Cacao Pathogens Ceratocystis cacaofunesta and Ceratocystis fimbriata. Pathogens 12: 287.

DOI: 10.3390/pathogens12020287

M. N. Stahr, C. Parada-Rojas, K. L. Childs, R. F. Alfenas, F. M. Fernandes, K. Avila, L. M. Quesada-Ocampo (2024)
Long-Read Sequencing Genome Assembly of Ceratocystis fimbriata Enables Development of Molecular Diagnostics for Sweetpotato Black Rot. Phytopathology® 114: 1411.

DOI: 10.1094/PHYTO-09-23-0341-R

Madison N. Stahr, Lina M. Quesada-Ocampo (2019)
Black Rot of Sweetpotato: A Comprehensive Diagnostic Guide. Plant Health Progress 20: 255.

DOI: 10.1094/PHP-08-19-0052-DG

Tawanda E. Maguvu, Renaud Travadon, Dario Cantu, Florent P. Trouillas (2023)
Whole genome sequencing and analysis of multiple isolates of Ceratocystis destructans, the causal agent of Ceratocystis canker of almond in California. Scientific Reports 13: .

DOI: 10.1038/s41598-023-41746-6

Brenda D. Wingfield, Dave K. Berger, Emma T. Steenkamp, Hye-Jin Lim, Tuan A. Duong, Burton H. Bluhm, Z. Wilhelm de Beer, Lieschen De Vos, G. Fourie, Kershney Naidoo, Nicky Olivier, Yao-Cheng Lin, Yves Van de Peer, Fourie Joubert, Bridget G. Crampton, Velushka Swart, Nicole Soal, Catherine Tatham, Magriet A. van der Nest, Nicolaas A. van der Merwe, Stephanie van Wyk, P. Markus Wilken, Michael J. Wingfield (2017)
Draft genome of Cercospora zeina, Fusarium pininemorale, Hawksworthiomyces lignivorus, Huntiella decipiens and Ophiostoma ips. IMA Fungus 8: 385.

DOI: 10.5598/imafungus.2017.08.02.10

Magriet A. van der Nest, Emma T. Steenkamp, Danielle Roodt, Nicole C. Soal, Marike Palmer, Wai-Yin Chan, P. Markus Wilken, Tuan A. Duong, Kershney Naidoo, Quentin C. Santana, Conrad Trollip, Lieschen De Vos, Stephanie van Wyk, Alistair R. McTaggart, Michael J. Wingfield, Brenda D. Wingfield (2019)
Genomic analysis of the aggressive tree pathogen Ceratocystis albifundus. Fungal Biology 123: 351.

DOI: 10.1016/j.funbio.2019.02.002

FeiFei Liu, Michael Mbenoun, Irene Barnes, Jolanda Roux, Michael J. Wingfield, GuoQing Li, JieQiong Li, ShuaiFei Chen (2015)
New Ceratocystis species from Eucalyptus and Cunninghamia in South China. Antonie van Leeuwenhoek 107: 1451.

DOI: 10.1007/s10482-015-0441-3

Z.W. de Beer, T.A. Duong, I. Barnes, B.D. Wingfield, M.J. Wingfield (2014)
Redefining Ceratocystis and allied genera. Studies in Mycology 79: 187.

DOI: 10.1016/j.simyco.2014.10.001

Brenda D. Wingfield, Irene Barnes, Z. Wilhelm de Beer, Lieschen De Vos, Tuan A. Duong, Aquillah M. Kanzi, Kershney Naidoo, Hai D. T. Nguyen, Quentin C. Santana, Mohammad Sayari, Keith A. Seifert, Emma T. Steenkamp, Conrad Trollip, Nicolaas A. van der Merwe, Magriet A. van der Nest, P. Markus Wilken, Michael J. Wingfield (2015)
Draft genome sequences of Ceratocystis eucalypticola, Chrysoporthe cubensis, C. deuterocubensis, Davidsoniella virescens, Fusarium temperatum, Graphilbum fragrans, Penicillium nordicum, and Thielaviopsis musarum. IMA Fungus 6: 493.

DOI: 10.5598/imafungus.2015.06.02.13

Nomaswazi N. Maseko, Emma T. Steenkamp, Brenda D. Wingfield, P. Markus Wilken (2023)
An in Silico Approach to Identifying TF Binding Sites: Analysis of the Regulatory Regions of BUSCO Genes from Fungal Species in the Ceratocystidaceae Family. Genes 14: 848.

DOI: 10.3390/genes14040848

Mohamed Ait-El-Mokhtar, Marouane Baslam (2023)
Holo-omic applications to unveil microbiome shaping sustainable horticultural production. Frontiers in Sustainable Food Systems 7: .

DOI: 10.3389/fsufs.2023.1151367

Aquillah M. Kanzi, Conrad Trollip, Michael J. Wingfield, Irene Barnes, Magriet A. Van der Nest, Brenda D. Wingfield (2020)
Phylogenomic incongruence in Ceratocystis: a clue to speciation?. BMC Genomics 21: .

DOI: 10.1186/s12864-020-6772-0

P. Markus Wilken, Emma T. Steenkamp, Magriet A. van der Nest, Michael J. Wingfield, Z. Wilhelm de Beer, Brenda D. Wingfield (2018)
Unexpected placement of the MAT1-1-2 gene in the MAT1-2 idiomorph of Thielaviopsis. Fungal Genetics and Biology 113: 32.

DOI: 10.1016/j.fgb.2018.01.007

Mohammad Sayari, Magrieta A. van der Nest, Emma T. Steenkamp, Saleh Rahimlou, Almuth Hammerbacher, Brenda D. Wingfield (2021)
Characterization of the Ergosterol Biosynthesis Pathway in Ceratocystidaceae. Journal of Fungi 7: 237.

DOI: 10.3390/jof7030237

Gabriela N. Ramos-Lizardo, Jonathan J. Mucherino-Muñoz, Eric R. G. R. Aguiar, Carlos Priminho Pirovani, Ronan Xavier Corrêa (2023)
A repertoire of candidate effector proteins of the fungus Ceratocystis cacaofunesta. Scientific Reports 13: .

DOI: 10.1038/s41598-023-43117-7

P. Markus Wilken, Frances A. Lane, Emma T. Steenkamp, Michael J. Wingfield, Brenda D. Wingfield (2024)
Unidirectional mating-type switching is underpinned by a conserved MAT1 locus architecture. Fungal Genetics and Biology 170: 103859.

DOI: 10.1016/j.fgb.2023.103859

Brenda D. Wingfield, Dave K. Berger, Martin P. A. Coetzee, Tuan A. Duong, Anke Martin, Nam Q. Pham, Noelani van den Berg, P. Markus Wilken, Kiruba Shankari Arun-Chinnappa, Irene Barnes, Sikelela Buthelezi, Buddhika Amarasinghe Dahanayaka, Alvaro Durán, Juanita Engelbrecht, Alice Feurtey, Arista Fourie, Gerda Fourie, Jesse Hartley, Eugene N. K. Kabwe, Mkhululi Maphosa, Deborah L. Narh Mensah, David L. Nsibo, Lizel Potgieter, Barsha Poudel, Eva H. Stukenbrock, Chanel Thomas, Niloofar Vaghefi, Tanya Welgemoed, Michael J. Wingfield (2022)
IMA genome‑F17. IMA Fungus 13: .

DOI: 10.1186/s43008-022-00104-3

M. A. Van der Nest, E. T. Steenkamp, A. R. McTaggart, C. Trollip, T. Godlonton, E. Sauerman, D. Roodt, K. Naidoo, M. P. A. Coetzee, P. M. Wilken, M. J. Wingfield, B. D. Wingfield (2015)
Saprophytic and pathogenic fungi in the Ceratocystidaceae differ in their ability to metabolize plant-derived sucrose. BMC Evolutionary Biology 15: .

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Arista Fourie, Michael J. Wingfield, Brenda D. Wingfield, Irene Barnes (2015)
Molecular markers delimit cryptic species in Ceratocystis sensu stricto. Mycological Progress 14: .

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Y. Marin-Felix, J.Z. Groenewald, L. Cai, Q. Chen, S. Marincowitz, I. Barnes, K. Bensch, U. Braun, E. Camporesi, U. Damm, Z.W. de Beer, A. Dissanayake, J. Edwards, A. Giraldo, M. Hernández-Restrepo, K.D. Hyde, R.S. Jayawardena, L. Lombard, J. Luangsa-ard, A.R. McTaggart, A.Y. Rossman, M. Sandoval-Denis, M. Shen, R.G. Shivas, Y.P. Tan, E.J. van der Linde, M.J. Wingfield, A.R. Wood, J.Q. Zhang, Y. Zhang, P.W. Crous (2017)
Genera of phytopathogenic fungi: GOPHY 1. Studies in Mycology 86: 99.

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Eddy Patricia Lopez Molano, Odalys García Cabrera, Juliana Jose, Leandro Costa do Nascimento, Marcelo Falsarella Carazzolle, Paulo José Pereira Lima Teixeira, Javier Correa Alvarez, Ricardo Augusto Tiburcio, Paulo Massanari Tokimatu Filho, Gustavo Machado Alvares de Lima, Rafael Victório Carvalho Guido, Thamy Lívia Ribeiro Corrêa, Adriana Franco Paes Leme, Piotr Mieczkowski, Gonçalo Amarante Guimarães Pereira (2018)
Ceratocystis cacaofunesta genome analysis reveals a large expansion of extracellular phosphatidylinositol-specific phospholipase-C genes (PI-PLC). BMC Genomics 19: .

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W. J. Nel, T. A. Duong, B. D. Wingfield, M. J. Wingfield, Z. W. de Beer (2018)
A new genus and species for the globally important, multihost root pathogen Thielaviopsis basicola. Plant Pathology 67: 871.

DOI: 10.1111/ppa.12803

Brenda D. Wingfield, Arista Fourie, Melissa C. Simpson, Vuyiswa S. Bushula-Njah, Janneke Aylward, Irene Barnes, Martin P. A. Coetzee, Léanne L. Dreyer, Tuan A. Duong, David M. Geiser, Francois Roets, E. T. Steenkamp, Magriet A. van der Nest, Carel J. van Heerden, Michael J. Wingfield (2019)
IMA Genome-F 11. IMA Fungus 10: .

DOI: 10.1186/s43008-019-0013-7

Brenda D. Wingfield, Jon M. Ambler, Martin P. A. Coetzee, Z. Wilhelm de Beer, Tuan A. Duong, Fourie Joubert, Almuth Hammerbacher, Alistair R. McTaggart, Kershney Naidoo, Hai D. T. Nguyen, Ekaterina Ponomareva, Quentin S. Santana, Keith A. Seifert, Emma T. Steenkamp, Conrad Trollip, Magriet A. van der Nest, Cobus M. Visagie, P. Markus Wilken, Michael J. Wingfield, Neriman Yilmaz (2016)
IMA Genome-F 6. IMA Fungus 7: 217.

DOI: 10.5598/imafungus.2016.07.01.11

Odalys García Cabrera, Eddy Patricia López Molano, Juliana José, Javier Correa Álvarez, Gonçalo Amarante Guimarães Pereira (2016)
Cacao Diseases. Chapter 12: 383.

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