Draft genomes of Amanita jacksonii, Ceratocystis albifundus, Fusarium circinatum, Huntiella omanensis, Leptographium procerum, Rutstroemia sydowiana, and Sclerotinia echinophila

Brenda Wingfield; Lisa Beirn; Jo Crouch; Jill Demers; Z. Wilhelm De Beer; Lieschen De Vos; Thomas Gordon; Jean-Marc Moncalvo; Kershney Naidoo; Santiago Sanchez-Ramirez; Danielle Roodt; Quentin Santana; Stephanie Slinski; Matt Stata; Stephen Taerum; P. Wilken; Andrea Wilson; Michael Wingfield; Brenda Wingfield

doi:10.5598/imafungus.2014.05.02.11

MPA Coetzee, QC Santana, ET Steenkamp, BD Wingfield, MJ Wingfield (2020)
Fungal genomes enhance our understanding of the pathogens affecting trees cultivated in Southern Hemisphere plantations. Southern Forests: a Journal of Forest Science 82: 215.

DOI: 10.2989/20702620.2020.1819153

Melissa C. Simpson, Martin P.A. Coetzee, Magriet A. van der Nest, Michael J. Wingfield, Brenda D. Wingfield (2018)
Ceratocystidaceae exhibit high levels of recombination at the mating-type (MAT) locus. Fungal Biology 122: 1184.

DOI: 10.1016/j.funbio.2018.09.003

Nicolau Sbaraini, Fábio C. Andreis, Claudia E. Thompson, Rafael L. M. Guedes, Ângela Junges, Thais Campos, Charley C. Staats, Marilene H. Vainstein, Ana T. Ribeiro de Vasconcelos, Augusto Schrank (2017)
Genome-Wide Analysis of Secondary Metabolite Gene Clusters in Ophiostoma ulmi and Ophiostoma novo-ulmi Reveals a Fujikurin-Like Gene Cluster with a Putative Role in Infection. Frontiers in Microbiology 8: .

DOI: 10.3389/fmicb.2017.01063

Xiaojun Jia, Xiaomeng Qin, Xueping Tian, Yuan Zhao, Tao Yang, Jun Huang (2021)
Inoculating with the microbial agents to start up the aerobic composting of mushroom residue and wood chips at low temperature. Journal of Environmental Chemical Engineering 9: 105294.

DOI: 10.1016/j.jece.2021.105294

Nomaswazi N. Maseko, Emma T. Steenkamp, Brenda D. Wingfield, P. Markus Wilken (2023)
An in Silico Approach to Identifying TF Binding Sites: Analysis of the Regulatory Regions of BUSCO Genes from Fungal Species in the Ceratocystidaceae Family. Genes 14: 848.

DOI: 10.3390/genes14040848

Andi M. Wilson, Michael J. Wingfield, Brenda D. Wingfield (2023)
Structure and number of mating pheromone genes is closely linked to sexual reproductive strategy in Huntiella. BMC Genomics 24: .

DOI: 10.1186/s12864-023-09355-9

Janneke Aylward, Brenda D. Wingfield, Léanne L. Dreyer, Francois Roets, Michael J. Wingfield, Emma T. Steenkamp (2017)
Contrasting carbon metabolism in saprotrophic and pathogenic microascalean fungi from Protea trees. Fungal Ecology 30: 88.

DOI: 10.1016/j.funeco.2017.09.002

Stephen J. Taerum, Thierry B. Hoareau, Tuan A. Duong, Z. Wilhelm de Beer, Robert Jankowiak, Michael J. Wingfield (2017)
Putative origins of the fungus Leptographium procerum. Fungal Biology 121: 82.

DOI: 10.1016/j.funbio.2016.09.007

Abdullah Zubaer, Alvan Wai, Nikita Patel, Jordan Perillo, Georg Hausner (2021)
The Mitogenomes of Ophiostoma minus and Ophiostoma piliferum and Comparisons With Other Members of the Ophiostomatales. Frontiers in Microbiology 12: .

DOI: 10.3389/fmicb.2021.618649

W.J. Nel, T.A. Duong, M.J. Wingfield, B.D. Wingfield, A. Hammerbacher, Z.W. de Beer (2018)
Heterothallism revealed in the root rot fungi Berkeleyomyces basicola and B. rouxiae. Fungal Biology 122: 1031.

DOI: 10.1016/j.funbio.2018.08.006

James C. Fulton, Jose C. Huguet-Tapia, Stephanie M. Adams, Nicholas S. Dufault, Tania Quesada, Jeremy T. Brawner, Antonis Rokas (2020)
Draft Genome Sequences of Three Fusarium circinatum Isolates Used To Inoculate a Pedigreed Population of Pinus elliottii Seedlings . Microbiology Resource Announcements 9: .

DOI: 10.1128/MRA.00631-20

M. Veronica Fumero, Alessandra Villani, Antonia Susca, Miriam Haidukowski, Maria T. Cimmarusti, Christopher Toomajian, John F. Leslie, Sofia N. Chulze, Antonio Moretti, Irina S. Druzhinina (2020)
Fumonisin and Beauvericin Chemotypes and Genotypes of the Sister Species Fusarium subglutinans and Fusarium temperatum . Applied and Environmental Microbiology 86: .

DOI: 10.1128/AEM.00133-20

Frances A. Lane, Deanné Du Plessis, Brenda D. Wingfield, P. Markus Wilken (2021)
Transferring an Agrobacterium‐mediated transformation protocol across eight genera in the Ceratocystidaceae. Forest Pathology 51: .

DOI: 10.1111/efp.12688

Brenda D. Wingfield, Lieschen De Vos, Andi M. Wilson, Tuan A. Duong, Niloofar Vaghefi, Angela Botes, Ravindra Nath Kharwar, Ramesh Chand, Barsha Poudel, Habibu Aliyu, Martin J. Barbetti, ShuaiFei Chen, Pieter de Maayer, FeiFei Liu, Sudhir Navathe, Shagun Sinha, Emma T. Steenkamp, Hiroyuki Suzuki, Kalonji A. Tshisekedi, Magriet A. van der Nest, Michael J. Wingfield (2022)
IMA Genome - F16. IMA Fungus 13: .

DOI: 10.1186/s43008-022-00089-z

Gabriela N. Ramos-Lizardo, Jonathan J. Mucherino-Muñoz, Eric R. G. R. Aguiar, Carlos Priminho Pirovani, Ronan Xavier Corrêa (2023)
A repertoire of candidate effector proteins of the fungus Ceratocystis cacaofunesta. Scientific Reports 13: .

DOI: 10.1038/s41598-023-43117-7

Andi M. Wilson, Magriet A. van der Nest, P. Markus Wilken, Michael J. Wingfield, Brenda D. Wingfield, Sung-Hwan Yun (2018)
Pheromone expression reveals putative mechanism of unisexuality in a saprobic ascomycete fungus. PLOS ONE 13: e0192517.

DOI: 10.1371/journal.pone.0192517

Y. Marin-Felix, J.Z. Groenewald, L. Cai, Q. Chen, S. Marincowitz, I. Barnes, K. Bensch, U. Braun, E. Camporesi, U. Damm, Z.W. de Beer, A. Dissanayake, J. Edwards, A. Giraldo, M. Hernández-Restrepo, K.D. Hyde, R.S. Jayawardena, L. Lombard, J. Luangsa-ard, A.R. McTaggart, A.Y. Rossman, M. Sandoval-Denis, M. Shen, R.G. Shivas, Y.P. Tan, E.J. van der Linde, M.J. Wingfield, A.R. Wood, J.Q. Zhang, Y. Zhang, P.W. Crous (2017)
Genera of phytopathogenic fungi: GOPHY 1. Studies in Mycology 86: 99.

DOI: 10.1016/j.simyco.2017.04.002

Mohammad Sayari, Emma T. Steenkamp, Magriet A. van der Nest, Brenda D. Wingfield (2018)
Diversity and evolution of polyketide biosynthesis gene clusters in the Ceratocystidaceae. Fungal Biology 122: 856.

DOI: 10.1016/j.funbio.2018.04.011

Mohammad Sayari, Magrieta A. van der Nest, Emma T. Steenkamp, Saleh Rahimlou, Almuth Hammerbacher, Brenda D. Wingfield (2021)
Characterization of the Ergosterol Biosynthesis Pathway in Ceratocystidaceae. Journal of Fungi 7: 237.

DOI: 10.3390/jof7030237

P. Markus Wilken, Emma T. Steenkamp, Magriet A. van der Nest, Michael J. Wingfield, Z. Wilhelm de Beer, Brenda D. Wingfield (2018)
Unexpected placement of the MAT1-1-2 gene in the MAT1-2 idiomorph of Thielaviopsis. Fungal Genetics and Biology 113: 32.

DOI: 10.1016/j.fgb.2018.01.007

Brenda D. Wingfield, Gerald F. Bills, Yang Dong, Wenli Huang, Wilma J. Nel, Benedicta S. Swalarsk-Parry, Niloofar Vaghefi, P. Markus Wilken, Zhiqiang An, Z. Wilhelm de Beer, Lieschen De Vos, Li Chen, Tuan A. Duong, Yun Gao, Almuth Hammerbacher, Julie R. Kikkert, Yan Li, Huiying Li, Kuan Li, Qiang Li, Xingzhong Liu, Xiao Ma, Kershney Naidoo, Sarah J. Pethybridge, Jingzu Sun, Emma T. Steenkamp, Magriet A. van der Nest, Stephanie van Wyk, Michael J. Wingfield, Chuan Xiong, Qun Yue, Xiaoling Zhang (2018)
Draft genome sequence of Annulohypoxylon stygium, Aspergillus mulundensis, Berkeleyomyces basicola (syn. Thielaviopsis basicola), Ceratocystis smalleyi, two Cercospora beticola strains, Coleophoma cylindrospora, Fusarium fracticaudum, Phialophora cf. hyalina, and Morchella septimelata. IMA Fungus 9: 199.

DOI: 10.5598/imafungus.2018.09.01.13

A. M. Wilson, M. J. Wingfield, B. D. Wingfield, Christina A. Cuomo (2022)
Truncation of MAT1-2-7 Deregulates Developmental Pathways Associated with Sexual Reproduction in Huntiella omanensis . Microbiology Spectrum 10: .

DOI: 10.1128/spectrum.01425-22

Yen-Wen Wang, Jaqueline Hess, Jason C Slot, Anne Pringle, Li-Jun Ma (2020)
De Novo Gene Birth, Horizontal Gene Transfer, and Gene Duplication as Sources of New Gene Families Associated with the Origin of Symbiosis inAmanita. Genome Biology and Evolution 12: 2168.

DOI: 10.1093/gbe/evaa193

P. Markus Wilken, Frances A. Lane, Emma T. Steenkamp, Michael J. Wingfield, Brenda D. Wingfield (2024)
Unidirectional mating-type switching is underpinned by a conserved MAT1 locus architecture. Fungal Genetics and Biology 170: 103859.

DOI: 10.1016/j.fgb.2023.103859

Santiago Sánchez‐Ramírez, Rodham E. Tulloss, Laura Guzmán‐Dávalos, Joaquín Cifuentes‐Blanco, Ricardo Valenzuela, Arturo Estrada‐Torres, Felipe Ruán‐Soto, Raúl Díaz‐Moreno, Nallely Hernández‐Rico, Mariano Torres‐Gómez, Hugo León, Jean‐Marc Moncalvo (2015)
In and out of refugia: historical patterns of diversity and demography in the North American Caesar's mushroom species complex. Molecular Ecology 24: 5938.

DOI: 10.1111/mec.13413

Brenda D. Wingfield, Mike J. Wingfield, Tuan A. Duong (2022)
Molecular basis of cycloheximide resistance in the Ophiostomatales revealed. Current Genetics 68: 505.

DOI: 10.1007/s00294-022-01235-1

Conrad Trollip, Angus J. Carnegie, Quang Dinh, Jatinder Kaur, David Smith, Ross Mann, Brendan Rodoni, Jacqueline Edwards (2021)
Ophiostomatoid fungi associated with pine bark beetles and infested pines in south-eastern Australia, including Graphilbum ipis-grandicollis sp. nov.. IMA Fungus 12: .

DOI: 10.1186/s43008-021-00076-w

P. Markus Wilken, Emma T. Steenkamp, Michael J. Wingfield, Z. Wilhelm de Beer, Brenda D. Wingfield (2017)
Which MAT gene? Pezizomycotina (Ascomycota) mating-type gene nomenclature reconsidered. Fungal Biology Reviews 31: 199.

DOI: 10.1016/j.fbr.2017.05.003

Magriet A. van der Nest, Emma T. Steenkamp, Danielle Roodt, Nicole C. Soal, Marike Palmer, Wai-Yin Chan, P. Markus Wilken, Tuan A. Duong, Kershney Naidoo, Quentin C. Santana, Conrad Trollip, Lieschen De Vos, Stephanie van Wyk, Alistair R. McTaggart, Michael J. Wingfield, Brenda D. Wingfield (2019)
Genomic analysis of the aggressive tree pathogen Ceratocystis albifundus. Fungal Biology 123: 351.

DOI: 10.1016/j.funbio.2019.02.002

Brenda D. Wingfield, Arista Fourie, Melissa C. Simpson, Vuyiswa S. Bushula-Njah, Janneke Aylward, Irene Barnes, Martin P. A. Coetzee, Léanne L. Dreyer, Tuan A. Duong, David M. Geiser, Francois Roets, E. T. Steenkamp, Magriet A. van der Nest, Carel J. van Heerden, Michael J. Wingfield (2019)
IMA Genome-F 11. IMA Fungus 10: .

DOI: 10.1186/s43008-019-0013-7

Mkhululi N. Maphosa, Emma T. Steenkamp, Aquillah M. Kanzi, Stephanie van Wyk, Lieschen De Vos, Quentin C. Santana, Tuan A. Duong, Brenda D. Wingfield (2022)
Intra-Species Genomic Variation in the Pine Pathogen Fusarium circinatum. Journal of Fungi 8: 657.

DOI: 10.3390/jof8070657

A.M. Wilson, T. Godlonton, M.A. van der Nest, P.M. Wilken, M.J. Wingfield, B.D. Wingfield (2015)
Unisexual reproduction in Huntiella moniliformis. Fungal Genetics and Biology 80: 1.

DOI: 10.1016/j.fgb.2015.04.008

Nicole C Soal, Martin P A Coetzee, Magriet A van der Nest, Almuth Hammerbacher, Brenda D Wingfield, A Rokas (2022)
Phenolic degradation by catechol dioxygenases is associated with pathogenic fungi with a necrotrophic lifestyle in the Ceratocystidaceae. G3 12: .

DOI: 10.1093/g3journal/jkac008

M. Sayari, M.A. van der Nest, E.T. Steenkamp, O.O. Adegeye, S. Marincowitz, B.D. Wingfield (2019)
Agrobacterium-mediated transformation of Ceratocystis albifundus. Microbiological Research 226: 55.

DOI: 10.1016/j.micres.2019.05.004

S. Woodward, H. Amin, J. Martín‐García, A. Solla, R. Diaz‐Vazquez, C. Romeralo, A. Alves, G. Pinto, D. Herron, S. Fraser, R. Zas, H. T. Doğmuş‐Lehtijärvi, P. Bonello, M. J. Wingfield, J. Witzell, J. J. Diez (2025)
Host‐Pathogen Interactions in the Pine‐Fusarium circinatum Pathosystem and the Potential for Resistance Deployment in the Field. Forest Pathology 55: .

DOI: 10.1111/efp.70020

M. A. Van der Nest, E. T. Steenkamp, A. R. McTaggart, C. Trollip, T. Godlonton, E. Sauerman, D. Roodt, K. Naidoo, M. P. A. Coetzee, P. M. Wilken, M. J. Wingfield, B. D. Wingfield (2015)
Saprophytic and pathogenic fungi in the Ceratocystidaceae differ in their ability to metabolize plant-derived sucrose. BMC Evolutionary Biology 15: .

DOI: 10.1186/s12862-015-0550-7

Santiago Sánchez-Ramírez, Andrew W. Wilson, Martin Ryberg (2017)
Biogeography of Mycorrhizal Symbiosis. Chapter 1: 1.

DOI: 10.1007/978-3-319-56363-3_1