Draft genome sequences of Chrysoporthe austroafricana, Diplodia scrobiculata, Fusarium nygamai, Leptographium lundbergii, Limonomyces culmigenus, Stagonosporopsis tanaceti, and Thielaviopsis punctulata

Brenda D. Wingfield; Peter K. Ades; Fatima A. Al-Naemi; Lisa A. Beirn; Wubetu Bihon; Jo Anne Crouch; Z. Wilhelm De Beer; Lieschen De Vos; Tuan A. Duong; Christopher J. Fields; Gerda Fourie; Aquillah M. Kanzi; Martha Malapi-Wight; Sarah J. Pethybridge; Osman Radwan; Gloria Rendon; Bernard Slippers; Quentin C. Santana; Emma T. Steenkamp; Paul W. Taylor; Niloofar Vaghefi; Nicolaas A. Van Der Merwe; Daniel Veltri; Michael J. Wingfield

doi:10.5598/imafungus.2015.06.01.15

Mohammad Sayari, Magrieta A. van der Nest, Emma T. Steenkamp, Saleh Rahimlou, Almuth Hammerbacher, Brenda D. Wingfield (2021)
Characterization of the Ergosterol Biosynthesis Pathway in Ceratocystidaceae. Journal of Fungi 7: 237.

DOI: 10.3390/jof7030237

M. Veronica Fumero, Alessandra Villani, Antonia Susca, Miriam Haidukowski, Maria T. Cimmarusti, Christopher Toomajian, John F. Leslie, Sofia N. Chulze, Antonio Moretti, Irina S. Druzhinina (2020)
Fumonisin and Beauvericin Chemotypes and Genotypes of the Sister Species Fusarium subglutinans and Fusarium temperatum . Applied and Environmental Microbiology 86: .

DOI: 10.1128/AEM.00133-20

Brenda D. Wingfield, Miao Liu, Hai D. T. Nguyen, Frances A. Lane, Seamus W. Morgan, Lieschen De Vos, P. Markus Wilken, Tuan A. Duong, Janneke Aylward, Martin P. A. Coetzee, Kasia Dadej, Z. Wilhelm De Beer, Wendy Findlay, Minette Havenga, Miroslav Kolařík, Jim G. Menzies, Kershney Naidoo, Olivia Pochopski, Parivash Shoukouhi, Quentin C. Santana, Keith A. Seifert, Nicole Soal, Emma T. Steenkamp, Catherine T. Tatham, Margriet A. van der Nest, Michael J. Wingfield (2018)
Nine draft genome sequences of Claviceps purpurea s.lat., including C. arundinis, C. humidiphila, and C. cf. spartinae, pseudomolecules for the pitch canker pathogen Fusarium circinatum, draft genome of Davidsoniella eucalypti, Grosmannia galeiformis, Quambalaria eucalypti, and Teratosphaeria destructans. IMA Fungus 9: 401.

DOI: 10.5598/imafungus.2018.09.02.10

Niloofar Vaghefi, Sarah J. Pethybridge, Frank S. Hay, Rebecca Ford, Marc E. Nicolas, Paul W. J. Taylor (2016)
Revisiting Stagonosporopsis species associated with chrysanthemum and pyrethrum ray blight. Australasian Plant Pathology 45: 561.

DOI: 10.1007/s13313-016-0446-z

P. Markus Wilken, Emma T. Steenkamp, Magriet A. van der Nest, Michael J. Wingfield, Z. Wilhelm de Beer, Brenda D. Wingfield (2018)
Unexpected placement of the MAT1-1-2 gene in the MAT1-2 idiomorph of Thielaviopsis. Fungal Genetics and Biology 113: 32.

DOI: 10.1016/j.fgb.2018.01.007

Brenda D. Wingfield, Gerald F. Bills, Yang Dong, Wenli Huang, Wilma J. Nel, Benedicta S. Swalarsk-Parry, Niloofar Vaghefi, P. Markus Wilken, Zhiqiang An, Z. Wilhelm de Beer, Lieschen De Vos, Li Chen, Tuan A. Duong, Yun Gao, Almuth Hammerbacher, Julie R. Kikkert, Yan Li, Huiying Li, Kuan Li, Qiang Li, Xingzhong Liu, Xiao Ma, Kershney Naidoo, Sarah J. Pethybridge, Jingzu Sun, Emma T. Steenkamp, Magriet A. van der Nest, Stephanie van Wyk, Michael J. Wingfield, Chuan Xiong, Qun Yue, Xiaoling Zhang (2018)
Draft genome sequence of Annulohypoxylon stygium, Aspergillus mulundensis, Berkeleyomyces basicola (syn. Thielaviopsis basicola), Ceratocystis smalleyi, two Cercospora beticola strains, Coleophoma cylindrospora, Fusarium fracticaudum, Phialophora cf. hyalina, and Morchella septimelata. IMA Fungus 9: 199.

DOI: 10.5598/imafungus.2018.09.01.13

Jan H. Nagel, Michael J. Wingfield, Bernard Slippers (2021)
Increased abundance of secreted hydrolytic enzymes and secondary metabolite gene clusters define the genomes of latent plant pathogens in the Botryosphaeriaceae. BMC Genomics 22: .

DOI: 10.1186/s12864-021-07902-w

Ronishree Mangwanda, Lizahn Zwart, Nicolaas A. van der Merwe, Lucy Novungayo Moleleki, Dave Kenneth Berger, Alexander A. Myburg, Sanushka Naidoo (2016)
Localization and Transcriptional Responses of Chrysoporthe austroafricana in Eucalyptus grandis Identify Putative Pathogenicity Factors. Frontiers in Microbiology 7: .

DOI: 10.3389/fmicb.2016.01953

Brenda D. Wingfield, Irene Barnes, Z. Wilhelm de Beer, Lieschen De Vos, Tuan A. Duong, Aquillah M. Kanzi, Kershney Naidoo, Hai D. T. Nguyen, Quentin C. Santana, Mohammad Sayari, Keith A. Seifert, Emma T. Steenkamp, Conrad Trollip, Nicolaas A. van der Merwe, Magriet A. van der Nest, P. Markus Wilken, Michael J. Wingfield (2015)
Draft genome sequences of Ceratocystis eucalypticola, Chrysoporthe cubensis, C. deuterocubensis, Davidsoniella virescens, Fusarium temperatum, Graphilbum fragrans, Penicillium nordicum, and Thielaviopsis musarum. IMA Fungus 6: 493.

DOI: 10.5598/imafungus.2015.06.02.13

Anabela Lopes, Benedetto T. Linaldeddu, Alan J.L. Phillips, Artur Alves (2018)
Mating type gene analyses in the genus Diplodia: From cryptic sex to cryptic species. Fungal Biology 122: 629.

DOI: 10.1016/j.funbio.2018.03.012

Aquillah M. Kanzi, Emma T. Steenkamp, Nicolaas A. Van der Merwe, Brenda D. Wingfield (2019)
The mating system of the Eucalyptus canker pathogen Chrysoporthe austroafricana and closely related species. Fungal Genetics and Biology 123: 41.

DOI: 10.1016/j.fgb.2018.12.001

Wilma J. Nel, Z. Wilhelm de Beer, Michael J. Wingfield, Michael Poulsen, Duur K. Aanen, Brenda D. Wingfield, Tuan A. Duong (2021)
Phylogenetic and phylogenomic analyses reveal two new genera and three new species of ophiostomatalean fungi from termite fungus combs. Mycologia : 1.

DOI: 10.1080/00275514.2021.1950455

Brenda D. Wingfield, Dave K. Berger, Emma T. Steenkamp, Hye-Jin Lim, Tuan A. Duong, Burton H. Bluhm, Z. Wilhelm de Beer, Lieschen De Vos, G. Fourie, Kershney Naidoo, Nicky Olivier, Yao-Cheng Lin, Yves Van de Peer, Fourie Joubert, Bridget G. Crampton, Velushka Swart, Nicole Soal, Catherine Tatham, Magriet A. van der Nest, Nicolaas A. van der Merwe, Stephanie van Wyk, P. Markus Wilken, Michael J. Wingfield (2017)
Draft genome of Cercospora zeina, Fusarium pininemorale, Hawksworthiomyces lignivorus, Huntiella decipiens and Ophiostoma ips. IMA Fungus 8: 385.

DOI: 10.5598/imafungus.2017.08.02.10

M. E. S. Oliveira, A. M. Kanzi, N. A. van der Merwe, M. J. Wingfield, B. D. Wingfield, G. A. Silva, M. A. Ferreira (2022)
Genetic variability in populations of Chrysoporthe cubensis and Chr. puriensis in Brazil. Australasian Plant Pathology 51: 175.

DOI: 10.1007/s13313-021-00847-4

Fatima A. Al‐Naemi, Talaat A. Ahmed, Resna Nishad, Osman Radwan (2016)
Antagonistic Effects of Trichoderma harzianum Isolates against Ceratocystis radicicola: pioneering a Biocontrol Strategy against Black Scorch Disease in Date Palm Trees. Journal of Phytopathology 164: 464.

DOI: 10.1111/jph.12472

Mohammad Sayari, Emma T. Steenkamp, Magriet A. van der Nest, Brenda D. Wingfield (2018)
Diversity and evolution of polyketide biosynthesis gene clusters in the Ceratocystidaceae. Fungal Biology 122: 856.

DOI: 10.1016/j.funbio.2018.04.011

Biju Vadakkemukadiyil Chellappan, Sherif Mohamed El-Ganainy, Hind Salih Alrajeh, Hashem Al-Sheikh (2023)
In Silico Characterization of the Secretome of the Fungal Pathogen Thielaviopsis punctulata, the Causal Agent of Date Palm Black Scorch Disease. Journal of Fungi 9: 303.

DOI: 10.3390/jof9030303

Brenda D. Wingfield, Lieschen De Vos, Andi M. Wilson, Tuan A. Duong, Niloofar Vaghefi, Angela Botes, Ravindra Nath Kharwar, Ramesh Chand, Barsha Poudel, Habibu Aliyu, Martin J. Barbetti, ShuaiFei Chen, Pieter de Maayer, FeiFei Liu, Sudhir Navathe, Shagun Sinha, Emma T. Steenkamp, Hiroyuki Suzuki, Kalonji A. Tshisekedi, Magriet A. van der Nest, Michael J. Wingfield (2022)
IMA Genome - F16. IMA Fungus 13: .

DOI: 10.1186/s43008-022-00089-z

Nicolau Sbaraini, Fábio C. Andreis, Claudia E. Thompson, Rafael L. M. Guedes, Ângela Junges, Thais Campos, Charley C. Staats, Marilene H. Vainstein, Ana T. Ribeiro de Vasconcelos, Augusto Schrank (2017)
Genome-Wide Analysis of Secondary Metabolite Gene Clusters in Ophiostoma ulmi and Ophiostoma novo-ulmi Reveals a Fujikurin-Like Gene Cluster with a Putative Role in Infection. Frontiers in Microbiology 8: .

DOI: 10.3389/fmicb.2017.01063

Lizahn Zwart, Dave Kenneth Berger, Lucy Novungayo Moleleki, Nicolaas A. van der Merwe, Alexander A. Myburg, Sanushka Naidoo (2017)
Evidence for salicylic acid signalling and histological changes in the defence response of Eucalyptus grandis to Chrysoporthe austroafricana. Scientific Reports 7: .

DOI: 10.1038/srep45402

Bernard Slippers, Pedro Willem Crous, Fahimeh Jami, Johannes Zacharias Groenewald, Michael John Wingfield (2017)
Diversity in the Botryosphaeriales: Looking back, looking forward. Fungal Biology 121: 307.

DOI: 10.1016/j.funbio.2017.02.002

Claudio G. Ametrano, Felix Grewe, Pedro W. Crous, Stephen B. Goodwin, Chen Liang, Laura Selbmann, H. Thorsten Lumbsch, Steven D. Leavitt, Lucia Muggia (2019)
Genome-scale data resolve ancestral rock-inhabiting lifestyle in Dothideomycetes (Ascomycota). IMA Fungus 10: .

DOI: 10.1186/s43008-019-0018-2

Nicolaas A. van der Merwe, Tshiamo Phakalatsane, P. Markus Wilken (2023)
The Unique Homothallic Mating-Type Loci of the Fungal Tree Pathogens Chrysoporthe syzygiicola and Chrysoporthe zambiensis from Africa. Genes 14: 1158.

DOI: 10.3390/genes14061158

Brenda D. Wingfield, Tuan A. Duong, Almuth Hammerbacher, Magnet A. van der Nest, Andi Wilson, Runlei Chang, Z. Wilhelm de Beer, Emma T. Steenkamp, P. Markus Wilken, Kershney Naidoo, Michael J. Wingfield (2016)
Draft genome sequences for Ceratocystis fagacearum, C. harringtonii, Grosmannia penicillata, and Huntiella bhutanensis. IMA Fungus 7: 317.

DOI: 10.5598/imafungus.2016.07.02.11

Giovanni Cafà, Thaís Regina Boufleur, Renata Rebellato Linhares de Castro, Nelson Sidnei Massola, Riccardo Baroncelli (2020)
Genome Sequence Data of the Soybean Pathogen Stagonosporopsis vannaccii: A Resource for Studies on Didymellaceae Evolution. Molecular Plant-Microbe Interactions® 33: 1022.

DOI: 10.1094/MPMI-01-20-0016-A

Gouthaman P. Purayil, Esam Eldin Saeed, Archana M. Mathai, Khaled A. El-Tarabily, Synan F. AbuQamar (2024)
A high-quality genome assembly and annotation of Thielaviopsis punctulata DSM102798. Scientific Data 11: .

DOI: 10.1038/s41597-024-03458-y

Demissew Tesfaye Teshome, Godfrey Elijah Zharare, Raphael Ployet, Sanushka Naidoo (2024)
Molecular mechanisms underlying tree host-pathogen interactions under drought stress and subsequent rewatering in Eucalyptus grandis. Plant Stress 14: 100697.

DOI: 10.1016/j.stress.2024.100697

Brenda D. Wingfield, Arista Fourie, Melissa C. Simpson, Vuyiswa S. Bushula-Njah, Janneke Aylward, Irene Barnes, Martin P. A. Coetzee, Léanne L. Dreyer, Tuan A. Duong, David M. Geiser, Francois Roets, E. T. Steenkamp, Magriet A. van der Nest, Carel J. van Heerden, Michael J. Wingfield (2019)
IMA Genome-F 11. IMA Fungus 10: .

DOI: 10.1186/s43008-019-0013-7

Feifei Liu, Shuaifei Chen, Maria A. Ferreira, Runlei Chang, Mohammad Sayari, Aquillah M. Kanzi, Brenda D. Wingfield, Michael J. Wingfield, David Pizarro, Ana Crespo, Pradeep K. Divakar, Z. Wilhelm de Beer, Tuan A. Duong (2019)
Draft genome sequences of five Calonectria species from Eucalyptus plantations in China, Celoporthe dispersa, Sporothrix phasma and Alectoria sarmentosa. IMA Fungus 10: .

DOI: 10.1186/s43008-019-0023-5

Brenda D. Wingfield, Mike J. Wingfield, Tuan A. Duong (2022)
Molecular basis of cycloheximide resistance in the Ophiostomatales revealed. Current Genetics 68: 505.

DOI: 10.1007/s00294-022-01235-1

W.J. Nel, T.A. Duong, M.J. Wingfield, B.D. Wingfield, A. Hammerbacher, Z.W. de Beer (2018)
Heterothallism revealed in the root rot fungi Berkeleyomyces basicola and B. rouxiae. Fungal Biology 122: 1031.

DOI: 10.1016/j.funbio.2018.08.006

Abdullah Zubaer, Alvan Wai, Nikita Patel, Jordan Perillo, Georg Hausner (2021)
The Mitogenomes of Ophiostoma minus and Ophiostoma piliferum and Comparisons With Other Members of the Ophiostomatales. Frontiers in Microbiology 12: .

DOI: 10.3389/fmicb.2021.618649

Jan H. Nagel, Michael J. Wingfield, Bernard Slippers (2018)
Evolution of the mating types and mating strategies in prominent genera in the Botryosphaeriaceae. Fungal Genetics and Biology 114: 24.

DOI: 10.1016/j.fgb.2018.03.003

MPA Coetzee, QC Santana, ET Steenkamp, BD Wingfield, MJ Wingfield (2020)
Fungal genomes enhance our understanding of the pathogens affecting trees cultivated in Southern Hemisphere plantations. Southern Forests: a Journal of Forest Science 82: 215.

DOI: 10.2989/20702620.2020.1819153

Jan H. Nagel, Michael J. Wingfield, Bernard Slippers (2021)
Next-generation sequencing provides important insights into the biology and evolution of the Botryosphaeriaceae. Fungal Biology Reviews 38: 25.

DOI: 10.1016/j.fbr.2021.09.002

Jazmín Blaz, Josué Barrera-Redondo, Mirna Vázquez-Rosas-Landa, Anahí Canedo-Téxon, Eneas Aguirre von Wobeser, Daniel Carrillo, Richard Stouthamer, Akif Eskalen, Emanuel Villafán, Alexandro Alonso-Sánchez, Araceli Lamelas, Luis Arturo Ibarra-Juarez, Claudia Anahí Pérez-Torres, Enrique Ibarra-Laclette (2018)
Genomic Signals of Adaptation towards Mutualism and Sociality in Two Ambrosia Beetle Complexes. Life 9: 2.

DOI: 10.3390/life9010002

Jan H. Nagel, Elsie M. Cruywagen, Joseph Machua, Michael J. Wingfield, Bernard Slippers (2020)
Highly transferable microsatellite markers for the genera Lasiodiplodia and Neofusicoccum. Fungal Ecology 44: 100903.

DOI: 10.1016/j.funeco.2019.100903

Lea Stauber, Simone Prospero, Daniel Croll, Aaron P. Mitchell (2020)
Comparative Genomics Analyses of Lifestyle Transitions at the Origin of an Invasive Fungal Pathogen in the GenusCryphonectria. mSphere 5: .

DOI: 10.1128/mSphere.00737-20

Magriet A. van der Nest, Renato Chávez, Lieschen De Vos, Tuan A. Duong, Carlos Gil-Durán, Maria Alves Ferreira, Frances A. Lane, Gloria Levicán, Quentin C. Santana, Emma T. Steenkamp, Hiroyuki Suzuki, Mario Tello, Jostina R. Rakoma, Inmaculada Vaca, Natalia Valdés, P. Markus Wilken, Michael J. Wingfield, Brenda D. Wingfield (2021)
IMA genome - F14. IMA Fungus 12: .

DOI: 10.1186/s43008-021-00055-1

Conrad Trollip, Angus J. Carnegie, Quang Dinh, Jatinder Kaur, David Smith, Ross Mann, Brendan Rodoni, Jacqueline Edwards (2021)
Ophiostomatoid fungi associated with pine bark beetles and infested pines in south-eastern Australia, including Graphilbum ipis-grandicollis sp. nov.. IMA Fungus 12: .

DOI: 10.1186/s43008-021-00076-w

Susanna Pecchia, Daniele Da Lio (2018)
Development of a rapid PCR-Nucleic Acid Lateral Flow Immunoassay (PCR-NALFIA) based on rDNA IGS sequence analysis for the detection of Macrophomina phaseolina in soil. Journal of Microbiological Methods 151: 118.

DOI: 10.1016/j.mimet.2018.06.010

Aquillah Mumo Kanzi, Brenda Diana Wingfield, Emma Theodora Steenkamp, Sanushka Naidoo, Nicolaas Albertus van der Merwe, Katherine A. Borkovich (2016)
Intron Derived Size Polymorphism in the Mitochondrial Genomes of Closely Related Chrysoporthe Species. PLOS ONE 11: e0156104.

DOI: 10.1371/journal.pone.0156104

Brenda D. Wingfield, Jon M. Ambler, Martin P. A. Coetzee, Z. Wilhelm de Beer, Tuan A. Duong, Fourie Joubert, Almuth Hammerbacher, Alistair R. McTaggart, Kershney Naidoo, Hai D. T. Nguyen, Ekaterina Ponomareva, Quentin S. Santana, Keith A. Seifert, Emma T. Steenkamp, Conrad Trollip, Magriet A. van der Nest, Cobus M. Visagie, P. Markus Wilken, Michael J. Wingfield, Neriman Yilmaz (2016)
IMA Genome-F 6. IMA Fungus 7: 217.

DOI: 10.5598/imafungus.2016.07.01.11

Guangxi Wu, Taruna A. Schuelke, Gloria Iriarte, Kirk Broders (2020)
The genome of the butternut canker pathogen, Ophiognomonia clavigignenti-juglandacearum shows an elevated number of genes associated with secondary metabolism and protection from host resistance responses. PeerJ 8: e9265.

DOI: 10.7717/peerj.9265

Robert H. Proctor, Martha M. Vaughan (2017)
Mycotoxigenic Fungi. Chapter 13: 201.

DOI: 10.1007/978-1-4939-6707-0_13