IMA Genome-F 6

Brenda Wingfield; Jon Ambler; Martin Coetzee; Z. Wilhelm De Beer; Tuan Duong; Fourie Joubert; Almuth Hammerbacher; Alistair Mctaggart; Kershney Naidoo; Hai Nguyen; Ekaterina Ponomareva; Quentin Santana; Keith Seifert; Emma Steenkamp; Conrad Trollip; Magriet Van Der Nest; Cobus Visagie; P. Wilken; Michael Wingfield; Neriman Yilmaz

doi:10.5598/imafungus.2016.07.01.11

Brenda D. Wingfield, Arista Fourie, Melissa C. Simpson, Vuyiswa S. Bushula-Njah, Janneke Aylward, Irene Barnes, Martin P. A. Coetzee, Léanne L. Dreyer, Tuan A. Duong, David M. Geiser, Francois Roets, E. T. Steenkamp, Magriet A. van der Nest, Carel J. van Heerden, Michael J. Wingfield (2019)
IMA Genome-F 11. IMA Fungus 10: .

DOI: 10.1186/s43008-019-0013-7

Brenda D. Wingfield, Dave K. Berger, Emma T. Steenkamp, Hye-Jin Lim, Tuan A. Duong, Burton H. Bluhm, Z. Wilhelm de Beer, Lieschen De Vos, G. Fourie, Kershney Naidoo, Nicky Olivier, Yao-Cheng Lin, Yves Van de Peer, Fourie Joubert, Bridget G. Crampton, Velushka Swart, Nicole Soal, Catherine Tatham, Magriet A. van der Nest, Nicolaas A. van der Merwe, Stephanie van Wyk, P. Markus Wilken, Michael J. Wingfield (2017)
Draft genome of Cercospora zeina, Fusarium pininemorale, Hawksworthiomyces lignivorus, Huntiella decipiens and Ophiostoma ips. IMA Fungus 8: 385.

DOI: 10.5598/imafungus.2017.08.02.10

Nomaswazi N. Maseko, Emma T. Steenkamp, Brenda D. Wingfield, P. Markus Wilken (2023)
An in Silico Approach to Identifying TF Binding Sites: Analysis of the Regulatory Regions of BUSCO Genes from Fungal Species in the Ceratocystidaceae Family. Genes 14: 848.

DOI: 10.3390/genes14040848

P. Markus Wilken, Frances A. Lane, Emma T. Steenkamp, Michael J. Wingfield, Brenda D. Wingfield (2024)
Unidirectional mating-type switching is underpinned by a conserved MAT1 locus architecture. Fungal Genetics and Biology 170: 103859.

DOI: 10.1016/j.fgb.2023.103859

Renate Heinzelmann, Cyril Dutech, Tetyana Tsykun, Frédéric Labbé, Jean-Paul Soularue, Simone Prospero (2019)
Latest advances and future perspectives inArmillariaresearch. Canadian Journal of Plant Pathology 41: 1.

DOI: 10.1080/07060661.2018.1558284

Magriet A. van der Nest, Emma T. Steenkamp, Danielle Roodt, Nicole C. Soal, Marike Palmer, Wai-Yin Chan, P. Markus Wilken, Tuan A. Duong, Kershney Naidoo, Quentin C. Santana, Conrad Trollip, Lieschen De Vos, Stephanie van Wyk, Alistair R. McTaggart, Michael J. Wingfield, Brenda D. Wingfield (2019)
Genomic analysis of the aggressive tree pathogen Ceratocystis albifundus. Fungal Biology 123: 351.

DOI: 10.1016/j.funbio.2019.02.002

Conrad Trollip, Angus J. Carnegie, Quang Dinh, Jatinder Kaur, David Smith, Ross Mann, Brendan Rodoni, Jacqueline Edwards (2021)
Ophiostomatoid fungi associated with pine bark beetles and infested pines in south-eastern Australia, including Graphilbum ipis-grandicollis sp. nov.. IMA Fungus 12: .

DOI: 10.1186/s43008-021-00076-w

Nicolau Sbaraini, Fábio C. Andreis, Claudia E. Thompson, Rafael L. M. Guedes, Ângela Junges, Thais Campos, Charley C. Staats, Marilene H. Vainstein, Ana T. Ribeiro de Vasconcelos, Augusto Schrank (2017)
Genome-Wide Analysis of Secondary Metabolite Gene Clusters in Ophiostoma ulmi and Ophiostoma novo-ulmi Reveals a Fujikurin-Like Gene Cluster with a Putative Role in Infection. Frontiers in Microbiology 8: .

DOI: 10.3389/fmicb.2017.01063

Mengtao Zhan, Menghua Tian, Weiguang Wang, Ganpeng Li, Xiaokai Lu, Guolei Cai, Haiying Yang, Gang Du, Lishuxin Huang (2020)
Draft genomic sequence of Armillaria gallica 012m: insights into its symbiotic relationship with Gastrodia elata. Brazilian Journal of Microbiology 51: 1539.

DOI: 10.1007/s42770-020-00317-x

Rachel A. Koch, Andrew W. Wilson, Olivier Séné, Terry W. Henkel, M. Catherine Aime (2017)
Resolved phylogeny and biogeography of the root pathogen Armillaria and its gasteroid relative, Guyanagaster. BMC Evolutionary Biology 17: .

DOI: 10.1186/s12862-017-0877-3

P. Markus Wilken, Emma T. Steenkamp, Magriet A. van der Nest, Michael J. Wingfield, Z. Wilhelm de Beer, Brenda D. Wingfield (2018)
Unexpected placement of the MAT1-1-2 gene in the MAT1-2 idiomorph of Thielaviopsis. Fungal Genetics and Biology 113: 32.

DOI: 10.1016/j.fgb.2018.01.007

Brenda D. Wingfield, Tuan A. Duong, Almuth Hammerbacher, Magnet A. van der Nest, Andi Wilson, Runlei Chang, Z. Wilhelm de Beer, Emma T. Steenkamp, P. Markus Wilken, Kershney Naidoo, Michael J. Wingfield (2016)
Draft genome sequences for Ceratocystis fagacearum, C. harringtonii, Grosmannia penicillata, and Huntiella bhutanensis. IMA Fungus 7: 317.

DOI: 10.5598/imafungus.2016.07.02.11

Renate Heinzelmann, Daniel Rigling, György Sipos, Martin Münsterkötter, Daniel Croll (2020)
Chromosomal assembly and analyses of genome-wide recombination rates in the forest pathogenic fungus Armillaria ostoyae. Heredity 124: 699.

DOI: 10.1038/s41437-020-0306-z

Abdullah Zubaer, Alvan Wai, Nikita Patel, Jordan Perillo, Georg Hausner (2021)
The Mitogenomes of Ophiostoma minus and Ophiostoma piliferum and Comparisons With Other Members of the Ophiostomatales. Frontiers in Microbiology 12: .

DOI: 10.3389/fmicb.2021.618649

Abdullah Zubaer, Alvan Wai, Georg Hausner (2018)
The mitochondrial genome of Endoconidiophora resinifera is intron rich. Scientific Reports 8: .

DOI: 10.1038/s41598-018-35926-y

MPA Coetzee, QC Santana, ET Steenkamp, BD Wingfield, MJ Wingfield (2020)
Fungal genomes enhance our understanding of the pathogens affecting trees cultivated in Southern Hemisphere plantations. Southern Forests: a Journal of Forest Science 82: 215.

DOI: 10.2989/20702620.2020.1819153

Aquillah M. Kanzi, Conrad Trollip, Michael J. Wingfield, Irene Barnes, Magriet A. Van der Nest, Brenda D. Wingfield (2020)
Phylogenomic incongruence in Ceratocystis: a clue to speciation?. BMC Genomics 21: .

DOI: 10.1186/s12864-020-6772-0

W.J. Nel, T.A. Duong, M.J. Wingfield, B.D. Wingfield, A. Hammerbacher, Z.W. de Beer (2018)
Heterothallism revealed in the root rot fungi Berkeleyomyces basicola and B. rouxiae. Fungal Biology 122: 1031.

DOI: 10.1016/j.funbio.2018.08.006

Brenda D. Wingfield, Gerald F. Bills, Yang Dong, Wenli Huang, Wilma J. Nel, Benedicta S. Swalarsk-Parry, Niloofar Vaghefi, P. Markus Wilken, Zhiqiang An, Z. Wilhelm de Beer, Lieschen De Vos, Li Chen, Tuan A. Duong, Yun Gao, Almuth Hammerbacher, Julie R. Kikkert, Yan Li, Huiying Li, Kuan Li, Qiang Li, Xingzhong Liu, Xiao Ma, Kershney Naidoo, Sarah J. Pethybridge, Jingzu Sun, Emma T. Steenkamp, Magriet A. van der Nest, Stephanie van Wyk, Michael J. Wingfield, Chuan Xiong, Qun Yue, Xiaoling Zhang (2018)
Draft genome sequence of Annulohypoxylon stygium, Aspergillus mulundensis, Berkeleyomyces basicola (syn. Thielaviopsis basicola), Ceratocystis smalleyi, two Cercospora beticola strains, Coleophoma cylindrospora, Fusarium fracticaudum, Phialophora cf. hyalina, and Morchella septimelata. IMA Fungus 9: 199.

DOI: 10.5598/imafungus.2018.09.01.13

Jinlong Cai, Ikram Muhammad, Bilian Chen, Peng Xu, Yiguo Li, Huini Xu, Kunzhi Li (2023)
Whole genome sequencing and analysis of Armillaria gallica Jzi34 symbiotic with Gastrodia elata. BMC Genomics 24: .

DOI: 10.1186/s12864-023-09384-4

Mohammad Sayari, Emma T. Steenkamp, Magriet A. van der Nest, Brenda D. Wingfield (2018)
Diversity and evolution of polyketide biosynthesis gene clusters in the Ceratocystidaceae. Fungal Biology 122: 856.

DOI: 10.1016/j.funbio.2018.04.011

Wilma J. Nel, Z. Wilhelm de Beer, Michael J. Wingfield, Michael Poulsen, Duur K. Aanen, Brenda D. Wingfield, Tuan A. Duong (2021)
Phylogenetic and phylogenomic analyses reveal two new genera and three new species of ophiostomatalean fungi from termite fungus combs. Mycologia : 1.

DOI: 10.1080/00275514.2021.1950455

Alvan Wai, Georg Hausner (2022)
The compact mitogenome of Ceratocystiopsis pallidobrunnea. Canadian Journal of Microbiology 68: 569.

DOI: 10.1139/cjm-2022-0038

Orsolya Kedves, Danish Shahab, Simang Champramary, Liqiong Chen, Boris Indic, Bettina Bóka, Viktor Dávid Nagy, Csaba Vágvölgyi, László Kredics, György Sipos (2021)
Epidemiology, Biotic Interactions and Biological Control of Armillarioids in the Northern Hemisphere. Pathogens 10: 76.

DOI: 10.3390/pathogens10010076

Frances A. Lane, Deanné Du Plessis, Brenda D. Wingfield, P. Markus Wilken (2021)
Transferring an Agrobacterium‐mediated transformation protocol across eight genera in the Ceratocystidaceae. Forest Pathology 51: .

DOI: 10.1111/efp.12688

Nicole C Soal, Martin P A Coetzee, Magriet A van der Nest, Almuth Hammerbacher, Brenda D Wingfield, A Rokas (2022)
Phenolic degradation by catechol dioxygenases is associated with pathogenic fungi with a necrotrophic lifestyle in the Ceratocystidaceae. G3 12: .

DOI: 10.1093/g3journal/jkac008

Mohammad Sayari, Magrieta A. van der Nest, Emma T. Steenkamp, Saleh Rahimlou, Almuth Hammerbacher, Brenda D. Wingfield (2021)
Characterization of the Ergosterol Biosynthesis Pathway in Ceratocystidaceae. Journal of Fungi 7: 237.

DOI: 10.3390/jof7030237

Guo-Fu Qin, Wen-Min Qin, Han-Chen Wang, Jun Zhao, Kari Korhonen, Jian Chen, Yu-Cheng Dai, Yuan Yuan (2024)
Phylogeny and species diversity of Armillaria in China based on morphological, mating test, and GCPSR criteria . Mycology : 1.

DOI: 10.1080/21501203.2024.2404121

Brenda D. Wingfield, Dave K. Berger, Martin P. A. Coetzee, Tuan A. Duong, Anke Martin, Nam Q. Pham, Noelani van den Berg, P. Markus Wilken, Kiruba Shankari Arun-Chinnappa, Irene Barnes, Sikelela Buthelezi, Buddhika Amarasinghe Dahanayaka, Alvaro Durán, Juanita Engelbrecht, Alice Feurtey, Arista Fourie, Gerda Fourie, Jesse Hartley, Eugene N. K. Kabwe, Mkhululi Maphosa, Deborah L. Narh Mensah, David L. Nsibo, Lizel Potgieter, Barsha Poudel, Eva H. Stukenbrock, Chanel Thomas, Niloofar Vaghefi, Tanya Welgemoed, Michael J. Wingfield (2022)
IMA genome‑F17. IMA Fungus 13: .

DOI: 10.1186/s43008-022-00104-3

Deborah L Narh Mensah, Brenda D Wingfield, Martin PA Coetzee (2023)
A Practical Approach to Genome Assembly and Annotation of Basidiomycota Using the Example of Armillaria . BioTechniques 75: 115.

DOI: 10.2144/btn-2023-0023

Melissa C. Simpson, Martin P.A. Coetzee, Magriet A. van der Nest, Michael J. Wingfield, Brenda D. Wingfield (2018)
Ceratocystidaceae exhibit high levels of recombination at the mating-type (MAT) locus. Fungal Biology 122: 1184.

DOI: 10.1016/j.funbio.2018.09.003

Christopher R. Dumigan, Savanna Maddock, Delaney Bray-Stone, Michael K. Deyholos (2023)
Hybrid Genome Assembly of Berkeleyomyces rouxiae, an Emerging Cannabis Fungal Pathogen Causing Black Root Rot in an Aeroponic Facility. Plant Disease 107: 2679.

DOI: 10.1094/PDIS-11-22-2690-RE

Y. Marin-Felix, J.Z. Groenewald, L. Cai, Q. Chen, S. Marincowitz, I. Barnes, K. Bensch, U. Braun, E. Camporesi, U. Damm, Z.W. de Beer, A. Dissanayake, J. Edwards, A. Giraldo, M. Hernández-Restrepo, K.D. Hyde, R.S. Jayawardena, L. Lombard, J. Luangsa-ard, A.R. McTaggart, A.Y. Rossman, M. Sandoval-Denis, M. Shen, R.G. Shivas, Y.P. Tan, E.J. van der Linde, M.J. Wingfield, A.R. Wood, J.Q. Zhang, Y. Zhang, P.W. Crous (2017)
Genera of phytopathogenic fungi: GOPHY 1. Studies in Mycology 86: 99.

DOI: 10.1016/j.simyco.2017.04.002

Mee-Sook Kim, Renate Heinzelmann, Frédéric Labbé, Yuko Ota, Rubén Damián Elías-Román, María Belén Pildain, Jane E. Stewart, Stephen Woodward, Ned B. Klopfenstein (2022)
Forest Microbiology. : 361.

DOI: 10.1016/B978-0-323-85042-1.00004-5