Draft genome of Cercospora zeina, Fusarium pininemorale, Hawksworthiomyces lignivorus, Huntiella decipiens and Ophiostoma ips

Brenda Wingfield; Dave Berger; Emma Steenkamp; Hye-Jin Lim; Tuan Duong; Burton Bluhm; Z. Wilhelm De Beer; Lieschen De Vos; G. Fourie; Kershney Naidoo; Nicky Olivier; Yao-Cheng Lin; Yves Van De Peer; Fourie Joubert; Bridget Crampton; Velushka Swart; Nicole Soal; Catherine Tatham; Magriet Van Der Nest; Nicolaas Van Der Merwe; Stephanie Van Wyk; P. Wilken; Michael Wingfield

doi:10.5598/imafungus.2017.08.02.10

MPA Coetzee, QC Santana, ET Steenkamp, BD Wingfield, MJ Wingfield (2020)
Fungal genomes enhance our understanding of the pathogens affecting trees cultivated in Southern Hemisphere plantations. Southern Forests: a Journal of Forest Science 82: 215.

DOI: 10.2989/20702620.2020.1819153

P. Markus Wilken, Janneke Aylward, Ramesh Chand, Felix Grewe, Frances A. Lane, Shagun Sinha, Claudio Ametrano, Isabel Distefano, Pradeep K. Divakar, Tuan A. Duong, Sabine Huhndorf, Ravindra N. Kharwar, H. Thorsten Lumbsch, Sudhir Navathe, Carlos A. Pérez, Nazaret Ramírez-Berrutti, Rohit Sharma, Yukun Sun, Brenda D. Wingfield, Michael J. Wingfield (2020)
IMA Genome - F13. IMA Fungus 11: .

DOI: 10.1186/s43008-020-00039-7

Tanya Welgemoed, Tuan A Duong, Irene Barnes, Eva H Stukenbrock, Dave K Berger, A Sethuraman (2023)
Population genomic analyses suggest recent dispersal events of the pathogen Cercospora zeina into East and Southern African maize cropping systems. G3: Genes, Genomes, Genetics 13: .

DOI: 10.1093/g3journal/jkad214

Melissa C. Simpson, Martin P.A. Coetzee, Magriet A. van der Nest, Michael J. Wingfield, Brenda D. Wingfield (2018)
Ceratocystidaceae exhibit high levels of recombination at the mating-type (MAT) locus. Fungal Biology 122: 1184.

DOI: 10.1016/j.funbio.2018.09.003

Kaige Ma, Yunming Wang, Jun Wang, Yanjing Zhang, Jie Gao (2023)
First report of ginseng root rot caused by Fusarium subglutinans. Journal of General Plant Pathology 89: 296.

DOI: 10.1007/s10327-023-01136-2

Zixiang Cheng, Xiangling Lv, Canxing Duan, Hanyong Zhu, Jianjun Wang, Zhennan Xu, Huifei Yin, Xiaohang Zhou, Mingshun Li, Zhuafang Hao, Fenghai Li, Xinhai Li, Jianfeng Weng (2023)
Pathogenicity Variation in Two Genomes of Cercospora Species Causing Gray Leaf Spot in Maize. Molecular Plant-Microbe Interactions® 36: 14.

DOI: 10.1094/MPMI-06-22-0138-R

Tanya Welgemoed, Rian Pierneef, David A. Read, Susanna E. Schulze, Gerhard Pietersen, Dave K. Berger (2020)
Next generation sequencing reveals past and current widespread occurrence of maize yellow mosaic virus in South Africa. European Journal of Plant Pathology 158: 237.

DOI: 10.1007/s10658-020-02070-1

Nicole C Soal, Martin P A Coetzee, Magriet A van der Nest, Almuth Hammerbacher, Brenda D Wingfield, A Rokas (2022)
Phenolic degradation by catechol dioxygenases is associated with pathogenic fungi with a necrotrophic lifestyle in the Ceratocystidaceae. G3 12: .

DOI: 10.1093/g3journal/jkac008

Conrad Trollip, Angus J. Carnegie, Brendan Rodoni, Jacqueline Edwards, Antonis Rokas (2022)
Draft Genome Sequences for Three Ophiostoma Species Acquired during Revisions of Australian Plant Pathogen Reference Collections . Microbiology Resource Announcements 11: .

DOI: 10.1128/mra.00175-22

Brenda D. Wingfield, Arista Fourie, Melissa C. Simpson, Vuyiswa S. Bushula-Njah, Janneke Aylward, Irene Barnes, Martin P. A. Coetzee, Léanne L. Dreyer, Tuan A. Duong, David M. Geiser, Francois Roets, E. T. Steenkamp, Magriet A. van der Nest, Carel J. van Heerden, Michael J. Wingfield (2019)
IMA Genome-F 11. IMA Fungus 10: .

DOI: 10.1186/s43008-019-0013-7

Pramod Kumar Gupta (2022)
Current status of Cercosporoid fungi in India, effective management strategies and future directions. Indian Phytopathology 75: 303.

DOI: 10.1007/s42360-022-00462-3

Ingrid Marais, Carla Buitendag, Tuan A. Duong, Bridget G. Crampton, Jacques Theron, Dawit Kidanemariam, Dave K. Berger (2024)
Double‐stranded RNA uptake for the control of the maize pathogen Cercospora zeina. Plant Pathology 73: 1480.

DOI: 10.1111/ppa.13909

Antonios Zambounis, Anastasia Boutsika, Naomi Gray, Mohitul Hossain, Michael Chatzidimopoulos, Dimitrios I. Tsitsigiannis, Epaminondas Paplomatas, James Hane (2024)
Pan-genome survey of Septoria pistaciarum, causal agent of Septoria leaf spot of pistachios, across three Aegean sub-regions of Greece. Frontiers in Microbiology 15: .

DOI: 10.3389/fmicb.2024.1396760

Magriet A. van der Nest, Renato Chávez, Lieschen De Vos, Tuan A. Duong, Carlos Gil-Durán, Maria Alves Ferreira, Frances A. Lane, Gloria Levicán, Quentin C. Santana, Emma T. Steenkamp, Hiroyuki Suzuki, Mario Tello, Jostina R. Rakoma, Inmaculada Vaca, Natalia Valdés, P. Markus Wilken, Michael J. Wingfield, Brenda D. Wingfield (2021)
IMA genome - F14. IMA Fungus 12: .

DOI: 10.1186/s43008-021-00055-1

Mohammad Sayari, Emma T. Steenkamp, Magriet A. van der Nest, Brenda D. Wingfield (2018)
Diversity and evolution of polyketide biosynthesis gene clusters in the Ceratocystidaceae. Fungal Biology 122: 856.

DOI: 10.1016/j.funbio.2018.04.011

Andi M. Wilson, Michael J. Wingfield, Brenda D. Wingfield (2023)
Structure and number of mating pheromone genes is closely linked to sexual reproductive strategy in Huntiella. BMC Genomics 24: .

DOI: 10.1186/s12864-023-09355-9

Tanya Welgemoed, Rian Pierneef, Lieven Sterck, Yves Van de Peer, Velushka Swart, Kevin Daniel Scheepers, Dave K. Berger (2020)
De novo Assembly of Transcriptomes From a B73 Maize Line Introgressed With a QTL for Resistance to Gray Leaf Spot Disease Reveals a Candidate Allele of a Lectin Receptor-Like Kinase. Frontiers in Plant Science 11: .

DOI: 10.3389/fpls.2020.00191

David L. Nsibo, Irene Barnes, Dave K. Berger (2024)
Recent advances in the population biology and management of maize foliar fungal pathogens Exserohilum turcicum, Cercospora zeina and Bipolaris maydis in Africa. Frontiers in Plant Science 15: .

DOI: 10.3389/fpls.2024.1404483

Mohammad Sayari, Magrieta A. van der Nest, Emma T. Steenkamp, Saleh Rahimlou, Almuth Hammerbacher, Brenda D. Wingfield (2021)
Characterization of the Ergosterol Biosynthesis Pathway in Ceratocystidaceae. Journal of Fungi 7: 237.

DOI: 10.3390/jof7030237

Jan H. Nagel, Michael J. Wingfield, Bernard Slippers (2021)
Increased abundance of secreted hydrolytic enzymes and secondary metabolite gene clusters define the genomes of latent plant pathogens in the Botryosphaeriaceae. BMC Genomics 22: .

DOI: 10.1186/s12864-021-07902-w

Christopher R. Dumigan, Savanna Maddock, Delaney Bray-Stone, Michael K. Deyholos (2023)
Hybrid Genome Assembly of Berkeleyomyces rouxiae, an Emerging Cannabis Fungal Pathogen Causing Black Root Rot in an Aeroponic Facility. Plant Disease 107: 2679.

DOI: 10.1094/PDIS-11-22-2690-RE

Wilma J. Nel, Z. Wilhelm de Beer, Michael J. Wingfield, Michael Poulsen, Duur K. Aanen, Brenda D. Wingfield, Tuan A. Duong (2021)
Phylogenetic and phylogenomic analyses reveal two new genera and three new species of ophiostomatalean fungi from termite fungus combs. Mycologia : 1.

DOI: 10.1080/00275514.2021.1950455

Shagun Sinha, Sudhir Navathe, Sakshi Singh, Deepak K. Gupta, Ravindra Nath Kharwar, Ramesh Chand (2023)
Genome sequencing and annotation of Cercospora sesami, a fungal pathogen causing leaf spot to Sesamum indicum. 3 Biotech 13: .

DOI: 10.1007/s13205-023-03468-4

Brenda D. Wingfield, Dave K. Berger, Martin P. A. Coetzee, Tuan A. Duong, Anke Martin, Nam Q. Pham, Noelani van den Berg, P. Markus Wilken, Kiruba Shankari Arun-Chinnappa, Irene Barnes, Sikelela Buthelezi, Buddhika Amarasinghe Dahanayaka, Alvaro Durán, Juanita Engelbrecht, Alice Feurtey, Arista Fourie, Gerda Fourie, Jesse Hartley, Eugene N. K. Kabwe, Mkhululi Maphosa, Deborah L. Narh Mensah, David L. Nsibo, Lizel Potgieter, Barsha Poudel, Eva H. Stukenbrock, Chanel Thomas, Niloofar Vaghefi, Tanya Welgemoed, Michael J. Wingfield (2022)
IMA genome‑F17. IMA Fungus 13: .

DOI: 10.1186/s43008-022-00104-3

Chase G. Mayers, Thomas C. Harrington, Douglas L. Mcnew, Richard A. Roeper, Peter H. W. Biedermann, Hayato Masuya, Craig C. Bateman (2020)
Four mycangium types and four genera of ambrosia fungi suggest a complex history of fungus farming in the ambrosia beetle tribe Xyloterini. Mycologia 112: 1104.

DOI: 10.1080/00275514.2020.1755209

Claudette Dewing, Magrieta A. Van der Nest, Quentin C. Santana, Robert H. Proctor, Brenda D. Wingfield, Emma T. Steenkamp, Lieschen De Vos (2022)
Characterization of Host-Specific Genes from Pine- and Grass-Associated Species of the Fusarium fujikuroi Species Complex. Pathogens 11: 858.

DOI: 10.3390/pathogens11080858

Brenda D. Wingfield, Miao Liu, Hai D. T. Nguyen, Frances A. Lane, Seamus W. Morgan, Lieschen De Vos, P. Markus Wilken, Tuan A. Duong, Janneke Aylward, Martin P. A. Coetzee, Kasia Dadej, Z. Wilhelm De Beer, Wendy Findlay, Minette Havenga, Miroslav Kolařík, Jim G. Menzies, Kershney Naidoo, Olivia Pochopski, Parivash Shoukouhi, Quentin C. Santana, Keith A. Seifert, Nicole Soal, Emma T. Steenkamp, Catherine T. Tatham, Margriet A. van der Nest, Michael J. Wingfield (2018)
Nine draft genome sequences of Claviceps purpurea s.lat., including C. arundinis, C. humidiphila, and C. cf. spartinae, pseudomolecules for the pitch canker pathogen Fusarium circinatum, draft genome of Davidsoniella eucalypti, Grosmannia galeiformis, Quambalaria eucalypti, and Teratosphaeria destructans. IMA Fungus 9: 401.

DOI: 10.5598/imafungus.2018.09.02.10

Brenda D. Wingfield, Lieschen De Vos, Andi M. Wilson, Tuan A. Duong, Niloofar Vaghefi, Angela Botes, Ravindra Nath Kharwar, Ramesh Chand, Barsha Poudel, Habibu Aliyu, Martin J. Barbetti, ShuaiFei Chen, Pieter de Maayer, FeiFei Liu, Sudhir Navathe, Shagun Sinha, Emma T. Steenkamp, Hiroyuki Suzuki, Kalonji A. Tshisekedi, Magriet A. van der Nest, Michael J. Wingfield (2022)
IMA Genome - F16. IMA Fungus 13: .

DOI: 10.1186/s43008-022-00089-z

Abdullah Zubaer, Alvan Wai, Nikita Patel, Jordan Perillo, Georg Hausner (2021)
The Mitogenomes of Ophiostoma minus and Ophiostoma piliferum and Comparisons With Other Members of the Ophiostomatales. Frontiers in Microbiology 12: .

DOI: 10.3389/fmicb.2021.618649

Conrad Trollip, Angus J. Carnegie, Quang Dinh, Jatinder Kaur, David Smith, Ross Mann, Brendan Rodoni, Jacqueline Edwards (2021)
Ophiostomatoid fungi associated with pine bark beetles and infested pines in south-eastern Australia, including Graphilbum ipis-grandicollis sp. nov.. IMA Fungus 12: .

DOI: 10.1186/s43008-021-00076-w

Nomaswazi N. Maseko, Emma T. Steenkamp, Brenda D. Wingfield, P. Markus Wilken (2023)
An in Silico Approach to Identifying TF Binding Sites: Analysis of the Regulatory Regions of BUSCO Genes from Fungal Species in the Ceratocystidaceae Family. Genes 14: 848.

DOI: 10.3390/genes14040848

Stephanie van Wyk, Brenda Wingfield, Lieschen De Vos, Nicolaas van der Merwe, Quentin Santana, Emma Steenkamp (2019)
Repeat-Induced Point Mutations Drive Divergence between Fusarium circinatum and Its Close Relatives. Pathogens 8: 298.

DOI: 10.3390/pathogens8040298

Brenda D. Wingfield, Gerald F. Bills, Yang Dong, Wenli Huang, Wilma J. Nel, Benedicta S. Swalarsk-Parry, Niloofar Vaghefi, P. Markus Wilken, Zhiqiang An, Z. Wilhelm de Beer, Lieschen De Vos, Li Chen, Tuan A. Duong, Yun Gao, Almuth Hammerbacher, Julie R. Kikkert, Yan Li, Huiying Li, Kuan Li, Qiang Li, Xingzhong Liu, Xiao Ma, Kershney Naidoo, Sarah J. Pethybridge, Jingzu Sun, Emma T. Steenkamp, Magriet A. van der Nest, Stephanie van Wyk, Michael J. Wingfield, Chuan Xiong, Qun Yue, Xiaoling Zhang (2018)
Draft genome sequence of Annulohypoxylon stygium, Aspergillus mulundensis, Berkeleyomyces basicola (syn. Thielaviopsis basicola), Ceratocystis smalleyi, two Cercospora beticola strains, Coleophoma cylindrospora, Fusarium fracticaudum, Phialophora cf. hyalina, and Morchella septimelata. IMA Fungus 9: 199.

DOI: 10.5598/imafungus.2018.09.01.13