Nine draft genome sequences of Claviceps purpurea s.lat., including C. arundinis, C. humidiphila, and C. cf. spartinae, pseudomolecules for the pitch canker pathogen Fusarium circinatum, draft genome of Davidsoniella eucalypti, Grosmannia galeiformis, Quambalaria eucalypti, and Teratosphaeria destructans

Brenda Wingfield; Miao Liu; Hai Nguyen; Frances Lane; P. Wilken; Tuan  Duong; Wilhelm de Beer; Tuan Duong; Janneke Aylward; Martin Coetzee; Kasia Dadej; Z. Wilhelm De Beer; Wendy Findlay; Minette Havenga; Miroslav Kolařík; Jim Menzies; Kershney Naidoo; Olivia Pochopski; Parivash Shoukouhi; Quentin Santana; Keith Seifert; Nicole Soal; Emma Steenkamp; Catherine Tatham; Margriet Van Der Nest; Michael Wingfield

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Samia Berraies, Miao Liu, James G. Menzies, Sheryl A. Tittlemier, David P. Overy, Sean Walkowiak (2024)
Ergot of cereals: Toxins, pathogens and management. Plant Pathology 73: 1301.

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Lieschen De Vos, Magriet A. van der Nest, Quentin C. Santana, Stephanie van Wyk, Kyle S. Leeuwendaal, Brenda D. Wingfield, Emma T. Steenkamp (2024)
Chromosome-Level Assemblies for the Pine Pitch Canker Pathogen Fusarium circinatum. Pathogens 13: 70.

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Wilma J. Nel, Z. Wilhelm de Beer, Michael J. Wingfield, Michael Poulsen, Duur K. Aanen, Brenda D. Wingfield, Tuan A. Duong (2021)
Phylogenetic and phylogenomic analyses reveal two new genera and three new species of ophiostomatalean fungi from termite fungus combs. Mycologia : 1.

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Claudette Dewing, Magrieta A. Van der Nest, Quentin C. Santana, Robert H. Proctor, Brenda D. Wingfield, Emma T. Steenkamp, Lieschen De Vos (2022)
Characterization of Host-Specific Genes from Pine- and Grass-Associated Species of the Fusarium fujikuroi Species Complex. Pathogens 11: 858.

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Mkhululi N. Maphosa, Emma T. Steenkamp, Aquillah M. Kanzi, Stephanie van Wyk, Lieschen De Vos, Quentin C. Santana, Tuan A. Duong, Brenda D. Wingfield (2022)
Intra-Species Genomic Variation in the Pine Pathogen Fusarium circinatum. Journal of Fungi 8: 657.

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Cobus M. Visagie, Donato Magistà, Massimo Ferrara, Felipe Balocchi, Tuan A. Duong, Ales Eichmeier, David Gramaje, Janneke Aylward, Scott E. Baker, Irene Barnes, Sara Calhoun, Maria De Angelis, Jens C. Frisvad, Eliska Hakalova, Richard D. Hayes, Jos Houbraken, Igor V. Grigoriev, Kurt LaButti, Catarina Leal, Anna Lipzen, Vivian Ng, Jasmyn Pangilinan, Jakub Pecenka, Giancarlo Perrone, Anja Piso, Emily Savage, Milan Spetik, Michael J. Wingfield, Yu Zhang, Brenda D. Wingfield (2023)
IMA genome-F18. IMA Fungus 14: .

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Roberto Faedda, Gabriela B. Silva (2024)
Development of a Real-Time PCR Assay for the Early Detection of the Eucalyptus Pathogen Quambalaria eucalypti. Forests 15: 375.

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Alida van Dijk, Andi M. Wilson, Bianke Marx, Bianca Hough, Benedicta Swalarsk-Parry, Lieschen De Vos, Michael J. Wingfield, Brenda D. Wingfield, Emma T. Steenkamp (2025)
CRISPR-Cas9 genome editing reveals that the Pgs gene of Fusarium circinatum is involved in pathogenicity, growth and sporulation. Fungal Genetics and Biology 177: 103970.

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M. Veronica Fumero, Wei Yue, María L. Chiotta, Sofía N. Chulze, John F. Leslie, Christopher Toomajian (2021)
Divergence and Gene Flow Between Fusarium subglutinans and F. temperatum Isolated from Maize in Argentina. Phytopathology® 111: 170.

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Carmen Hicks, Thomas E. Witte, Amanda Sproule, Tiah Lee, Parivash Shoukouhi, Zlatko Popovic, Jim G. Menzies, Christopher N. Boddy, Miao Liu, David P. Overy (2021)
Evolution of the Ergot Alkaloid Biosynthetic Gene Cluster Results in Divergent Mycotoxin Profiles in Claviceps purpurea Sclerotia. Toxins 13: 861.

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Stephanie van Wyk, Brenda Wingfield, Lieschen De Vos, Nicolaas van der Merwe, Quentin Santana, Emma Steenkamp (2019)
Repeat-Induced Point Mutations Drive Divergence between Fusarium circinatum and Its Close Relatives. Pathogens 8: 298.

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Brenda D. Wingfield, Lieschen De Vos, Andi M. Wilson, Tuan A. Duong, Niloofar Vaghefi, Angela Botes, Ravindra Nath Kharwar, Ramesh Chand, Barsha Poudel, Habibu Aliyu, Martin J. Barbetti, ShuaiFei Chen, Pieter de Maayer, FeiFei Liu, Sudhir Navathe, Shagun Sinha, Emma T. Steenkamp, Hiroyuki Suzuki, Kalonji A. Tshisekedi, Magriet A. van der Nest, Michael J. Wingfield (2022)
IMA Genome - F16. IMA Fungus 13: .

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MPA Coetzee, QC Santana, ET Steenkamp, BD Wingfield, MJ Wingfield (2020)
Fungal genomes enhance our understanding of the pathogens affecting trees cultivated in Southern Hemisphere plantations. Southern Forests: a Journal of Forest Science 82: 215.

DOI: 10.2989/20702620.2020.1819153

William D Eaton, Katie M McGee, Ava Glahn, Alexander Lemenze, Patricia Soteropoulos (2025)
Use of a logging road in a Costa Rican forest changes the composition and stability of soil microbial decomposer communities, and the conversion of organic carbon into biomass. Journal of Applied Microbiology 136: .

DOI: 10.1093/jambio/lxaf075

Stephanie van Wyk, Brenda D. Wingfield, Lieschen De Vos, Nicolaas A. van der Merwe, Emma T. Steenkamp (2021)
Genome-Wide Analyses of Repeat-Induced Point Mutations in the Ascomycota. Frontiers in Microbiology 11: .

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Minette Havenga, Brenda D. Wingfield, Michael J. Wingfield, Francois Roets, Léanne L. Dreyer, Catherine T. Tatham, Tuan A. Duong, P. Markus Wilken, ShuaiFei Chen, Janneke Aylward (2020)
Mating strategy and mating type distribution in six global populations of the Eucalyptus foliar pathogen Teratosphaeria destructans. Fungal Genetics and Biology 137: 103350.

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Brenda D. Wingfield, Arista Fourie, Melissa C. Simpson, Vuyiswa S. Bushula-Njah, Janneke Aylward, Irene Barnes, Martin P. A. Coetzee, Léanne L. Dreyer, Tuan A. Duong, David M. Geiser, Francois Roets, E. T. Steenkamp, Magriet A. van der Nest, Carel J. van Heerden, Michael J. Wingfield (2019)
IMA Genome-F 11. IMA Fungus 10: .

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Minette Havenga, Brenda D. Wingfield, Michael J. Wingfield, Léanne L. Dreyer, Francois Roets, ShuaiFei Chen, Janneke Aylward (2020)
Low genetic diversity and strong geographic structure in introduced populations of the Eucalyptus foliar pathogen Teratosphaeria destructans. Plant Pathology 69: 1540.

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Rajdeep Jaswal, Kanti Kiran, Sivasubramanian Rajarammohan, Himanshu Dubey, Pankaj Kumar Singh, Yogesh Sharma, Rupesh Deshmukh, Humira Sonah, Naveen Gupta, T.R. Sharma (2020)
Effector Biology of Biotrophic Plant Fungal Pathogens: Current Advances and Future Prospects. Microbiological Research 241: 126567.

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Tuan Anh Duong, Janneke Aylward, Claudio Gennaro Ametrano, Barsha Poudel, Quentin Carlo Santana, Pieter Markus Wilken, Anke Martin, Kiruba Shankari Arun-Chinnappa, Lieschen de Vos, Isabel DiStefano, Felix Grewe, Sabine Huhndorf, Helge Thorsten Lumbsch, Jostina Raesetsa Rakoma, Barsha Poudel, Emma Theodora Steenkamp, Yukun Sun, Magriet A. van der Nest, Michael John Wingfield, Neriman Yilmaz, Brenda Diana Wingfield (2021)
IMA Genome - F15. IMA Fungus 12: .

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Nomaswazi N. Maseko, Emma T. Steenkamp, Brenda D. Wingfield, P. Markus Wilken (2023)
An in Silico Approach to Identifying TF Binding Sites: Analysis of the Regulatory Regions of BUSCO Genes from Fungal Species in the Ceratocystidaceae Family. Genes 14: 848.

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Benedicta S. Swalarsk-Parry, Emma T. Steenkamp, Stephanie van Wyk, Quentin C. Santana, Magriet A. van der Nest, Almuth Hammerbacher, Brenda D. Wingfield, Lieschen De Vos (2022)
Identification and Characterization of a QTL for Growth of Fusarium circinatum on Pine-Based Medium. Journal of Fungi 8: 1214.

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Stephen A Wyka, Stephen J Mondo, Miao Liu, Jeremy Dettman, Vamsi Nalam, Kirk D Broders, Hoffman Federico (2021)
Whole-Genome Comparisons of Ergot Fungi Reveals the Divergence and Evolution of Species within the Genus Claviceps Are the Result of Varying Mechanisms Driving Genome Evolution and Host Range Expansion. Genome Biology and Evolution 13: .

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Conrad Trollip, Angus J. Carnegie, Quang Dinh, Jatinder Kaur, David Smith, Ross Mann, Brendan Rodoni, Jacqueline Edwards (2021)
Ophiostomatoid fungi associated with pine bark beetles and infested pines in south-eastern Australia, including Graphilbum ipis-grandicollis sp. nov.. IMA Fungus 12: .

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S. Woodward, H. Amin, J. Martín‐García, A. Solla, R. Diaz‐Vazquez, C. Romeralo, A. Alves, G. Pinto, D. Herron, S. Fraser, R. Zas, H. T. Doğmuş‐Lehtijärvi, P. Bonello, M. J. Wingfield, J. Witzell, J. J. Diez (2025)
Host‐Pathogen Interactions in the Pine‐Fusarium circinatum Pathosystem and the Potential for Resistance Deployment in the Field. Forest Pathology 55: .

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Janneke Aylward, Michael J Wingfield, Francois Roets, Brenda D Wingfield (2022)
A High-Quality Fungal Genome Assembly Resolved from a Sample Accidentally Contaminated by Multiple Taxa. BioTechniques 72: 39.

DOI: 10.2144/btn-2021-0097

Nicole C Soal, Martin P A Coetzee, Magriet A van der Nest, Almuth Hammerbacher, Brenda D Wingfield, A Rokas (2022)
Phenolic degradation by catechol dioxygenases is associated with pathogenic fungi with a necrotrophic lifestyle in the Ceratocystidaceae. G3 12: .

DOI: 10.1093/g3journal/jkac008

Miao Liu, Wendy Findlay, Jeremy Dettman, Stephen A. Wyka, Kirk Broders, Parivash Shoukouhi, Kasia Dadej, Miroslav Kolařík, Arpeace Basnyat, Jim G. Menzies (2021)
Mining Indole Alkaloid Synthesis Gene Clusters from Genomes of 53 Claviceps Strains Revealed Redundant Gene Copies and an Approximate Evolutionary Hourglass Model. Toxins 13: 799.

DOI: 10.3390/toxins13110799

Minette Havenga, Brenda D. Wingfield, Michael J. Wingfield, Léanne L. Dreyer, Francois Roets, Janneke Aylward (2021)
Genetic response to nitrogen starvation in the aggressive Eucalyptus foliar pathogen Teratosphaeria destructans. Current Genetics 67: 981.

DOI: 10.1007/s00294-021-01208-w

Magriet A. van der Nest, Renato Chávez, Lieschen De Vos, Tuan A. Duong, Carlos Gil-Durán, Maria Alves Ferreira, Frances A. Lane, Gloria Levicán, Quentin C. Santana, Emma T. Steenkamp, Hiroyuki Suzuki, Mario Tello, Jostina R. Rakoma, Inmaculada Vaca, Natalia Valdés, P. Markus Wilken, Michael J. Wingfield, Brenda D. Wingfield (2021)
IMA genome - F14. IMA Fungus 12: .

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Brenda D. Wingfield, Mike J. Wingfield, Tuan A. Duong (2022)
Molecular basis of cycloheximide resistance in the Ophiostomatales revealed. Current Genetics 68: 505.

DOI: 10.1007/s00294-022-01235-1

P. Markus Wilken, Janneke Aylward, Ramesh Chand, Felix Grewe, Frances A. Lane, Shagun Sinha, Claudio Ametrano, Isabel Distefano, Pradeep K. Divakar, Tuan A. Duong, Sabine Huhndorf, Ravindra N. Kharwar, H. Thorsten Lumbsch, Sudhir Navathe, Carlos A. Pérez, Nazaret Ramírez-Berrutti, Rohit Sharma, Yukun Sun, Brenda D. Wingfield, Michael J. Wingfield (2020)
IMA Genome - F13. IMA Fungus 11: .

DOI: 10.1186/s43008-020-00039-7