The 256 kb mitochondrial genome of Clavaria fumosa is the largest among phylum Basidiomycota and is rich in introns and intronic ORFs

Qiang Li; Yajie Wang; Wen Yao; Jinwen Shen; Mingyue Chen; Ming Gao; Jiening Ren; Qiang Li; Na Liu

doi:10.1186/s43008-020-00047-7

Yue Deng, Jie He (2022)
Characterization of the complete mitochondrial genome of Aspergillus terricola (Aspergillaceae, Eurotiales), isolated from soy sauce fermentation system. Mitochondrial DNA Part B 7: 76.

DOI: 10.1080/23802359.2021.2008832

Qingzhou Ma, Yuehua Geng, Qiang Li, Chongyang Cheng, Rui Zang, Yashuang Guo, Haiyan Wu, Chao Xu, Meng Zhang (2022)
Comparative mitochondrial genome analyses reveal conserved gene arrangement but massive expansion/contraction in two closely related Exserohilum pathogens. Computational and Structural Biotechnology Journal 20: 1456.

DOI: 10.1016/j.csbj.2022.03.016

Xue Bai, Xueling Ye, Yiming Luo, Changyin Liu, Qi Wu (2021)
Characterization of the first complete chloroplast genome of Amaranthus hybridus (Caryophyllales: Amaranthaceae) with phylogenetic implications. Mitochondrial DNA Part B 6: 3306.

DOI: 10.1080/23802359.2021.1994890

Peng Wu, Zhijie Bao, Wenying Tu, Lijiao Li, Chuan Xiong, Xin Jin, Ping Li, Mingying Gui, Wenli Huang, Qiang Li (2021)
The mitogenomes of two saprophytic Boletales species (Coniophora) reveals intron dynamics and accumulation of plasmid-derived and non-conserved genes. Computational and Structural Biotechnology Journal 19: 401.

DOI: 10.1016/j.csbj.2020.12.041

Qiang Li, Peng Wu, Lijiao Li, Huiyu Feng, Wenying Tu, Zhijie Bao, Chuan Xiong, Mingying Gui, Wenli Huang (2021)
The first eleven mitochondrial genomes from the ectomycorrhizal fungal genus (Boletus) reveal intron loss and gene rearrangement. International Journal of Biological Macromolecules 172: 560.

DOI: 10.1016/j.ijbiomac.2021.01.087

Hao Tan, Yang Yu, Yu Fu, Tianhai Liu, Yong Wang, Weihong Peng, Bo Wang, Jian Chen (2022)
Comparative analyses of Flammulina filiformis mitochondrial genomes reveal high length polymorphism in intergenic regions and multiple intron gain/loss in cox1. International Journal of Biological Macromolecules 221: 1593.

DOI: 10.1016/j.ijbiomac.2022.09.110

Jie Cheng, Qing Luo, Yuanhang Ren, Zhou Luo, Wenlong Liao, Xu Wang, Qiang Li (2021)
Panorama of intron dynamics and gene rearrangements in the phylum Basidiomycota as revealed by the complete mitochondrial genome of Turbinellus floccosus. Applied Microbiology and Biotechnology 105: 2017.

DOI: 10.1007/s00253-021-11153-w

Qiufen Gou, Chaoqin Ren, Cong Peng (2021)
Characterization of the complete mitochondrial genome of Peniophora lycii (Russulales: Peniophoraceae) with its phylogenetic analysis. Mitochondrial DNA Part B 6: 2200.

DOI: 10.1080/23802359.2021.1945508

Shu-rong Wang, Jiang-ping Zhang, Yi-rong He, Ming-chang Chang, Jun-long Meng (2021)
Characterization of the complete mitochondrial genome of Coprinellus micaceus, a wild saprobic mushroom in China. Mitochondrial DNA Part B 6: 1979.

DOI: 10.1080/23802359.2021.1938717

Miya Hugaboom, Elizabeth Anne Hatmaker, Abigail L LaBella, Antonis Rokas, R B Todd (2023)
Evolution and codon usage bias of mitochondrial and nuclear genomes in Aspergillus section Flavi . G3 13: .

DOI: 10.1093/g3journal/jkac285

Chunhua Zhao, Xi-long Feng, Zhen-xin Wang, Jianzhao Qi (2023)
The First Whole Genome Sequencing of Agaricus bitorquis and Its Metabolite Profiling. Journal of Fungi 9: 485.

DOI: 10.3390/jof9040485

Qiang Li, Lijiao Li, Ting Zhang, Peng Xiang, Qian Wu, Wenying Tu, Zhijie Bao, Liang Zou, Cheng Chen (2022)
The first two mitochondrial genomes for the genus Ramaria reveal mitochondrial genome evolution of Ramaria and phylogeny of Basidiomycota. IMA Fungus 13: .

DOI: 10.1186/s43008-022-00100-7

Xueling Ye, Luo Wang, Dabing Xiang, Yanxia Sun (2021)
The first complete chloroplast genome of Fagopyrum leptopodum (Diels) Hedberg (Caryophyllales: Polygonaceae) with phylogenetic implications. Mitochondrial DNA Part B 6: 2203.

DOI: 10.1080/23802359.2021.1945967

María Lorena Castrillo, Gustavo Ángel Bich, Natalia Soledad Amerio, Marcela Paola Barengo, Pedro Darío Zapata, Mario Carlos Nazareno Saparrat, Laura Lidia Villalba (2023)
Trichoderma koningiopsis (Hypocreaceae) has the smallest mitogenome of the genus Trichoderma. Frontiers in Microbiology 14: .

DOI: 10.3389/fmicb.2023.1141087

Cheng Chen, Qiang Li, Rongtao Fu, Jian Wang, Guangmin Deng, Xiaojuan Chen, Daihua Lu (2021)
Comparative mitochondrial genome analysis reveals intron dynamics and gene rearrangements in two Trametes species. Scientific Reports 11: .

DOI: 10.1038/s41598-021-82040-7

Piotr Androsiuk, Adam Okorski, Łukasz Paukszto, Jan Paweł Jastrzębski, Sławomir Ciesielski, Agnieszka Pszczółkowska (2022)
Characterization and phylogenetic analysis of the complete mitochondrial genome of the pathogenic fungus Ilyonectria destructans. Scientific Reports 12: .

DOI: 10.1038/s41598-022-05428-z

Wenli Huang, Huiyu Feng, Wenying Tu, Chuan Xiong, Xin Jin, Ping Li, Xu Wang, Qiang Li (2021)
Comparative Mitogenomic Analysis Reveals Dynamics of Intron Within and Between Tricholoma Species and Phylogeny of Basidiomycota. Frontiers in Genetics 12: .

DOI: 10.3389/fgene.2021.534871

Qiaofeng Liu, Xin Wang (2021)
Characterization and phylogenetic analysis of the complete mitochondrial genome of pathogen Trichosporon inkin (Trichosporonales: Trichosporonaceae). Mitochondrial DNA Part B 6: 803.

DOI: 10.1080/23802359.2021.1882912

Yong Nie, Heng Zhao, Zimin Wang, Zhengyu Zhou, Xiaoyong Liu, Bo Huang (2021)
The Gene Rearrangement, Loss, Transfer, and Deep Intronic Variation in Mitochondrial Genomes of Conidiobolus. Frontiers in Microbiology 12: .

DOI: 10.3389/fmicb.2021.765733

Aifeire Abuduaini, Yuan-Bing Wang, Hui-Ying Zhou, Rui-Ping Kang, Ming-Liang Ding, Yu Jiang, Fei-Ya Suo, Luo-Dong Huang (2021)
The complete mitochondrial genome of Ophiocordyceps gracilis and its comparison with related species. IMA Fungus 12: .

DOI: 10.1186/s43008-021-00081-z

Qiang Li, Ting Zhang, Lijiao Li, Zhijie Bao, Wenying Tu, Peng Xiang, Qian Wu, Ping Li, Mei Cao, Wenli Huang (2022)
Comparative Mitogenomic Analysis Reveals Intraspecific, Interspecific Variations and Genetic Diversity of Medical Fungus Ganoderma. Journal of Fungi 8: 781.

DOI: 10.3390/jof8080781

Jin-Xin Ma, Hai-Jiao Li, Can Jin, Hao Wang, Lu-Xin Tang, Jing Si, Bao-Kai Cui (2025)
Assembly and comparative analysis of the complete mitochondrial genome of Daedaleopsis sinensis (Polyporaceae, Basidiomycota), contributing to understanding fungal evolution and ecological functions. IMA Fungus 16: .

DOI: 10.3897/imafungus.16.141288

Jia Fu, Wenying Tu, Zhijie Bao, Lijiao Li, Qiang Li (2021)
The first complete mitochondrial genome of edible and medicinal fungus Chroogomphus rutilus (Gomphidiaceae, Boletales) and insights into its phylogeny. Mitochondrial DNA Part B 6: 2355.

DOI: 10.1080/23802359.2021.1950066

Qiang Li, Wenqi Xiao, Peng Wu, Ting Zhang, Peng Xiang, Qian Wu, Liang Zou, Mingying Gui (2023)
The first two mitochondrial genomes from Apiotrichum reveal mitochondrial evolution and different taxonomic assignment of Trichosporonales. IMA Fungus 14: .

DOI: 10.1186/s43008-023-00112-x

Peng Wang, Tianhao Lu, Jingwei Huang (2021)
The first complete mitochondrial genome of Macalpinomyces bursus (Ustilaginales: Ustilaginaceae) and insights into its phylogeny. Mitochondrial DNA Part B 6: 2151.

DOI: 10.1080/23802359.2021.1944383

Cong Peng, Zhijie Bao, Wenying Tu, Lijiao Li, Qiang Li (2021)
The first complete mitochondrial genome of mushroom Leucoagaricus naucinus (Agaricaceae, Agaricales) and insights into its phylogeny. Mitochondrial DNA Part B 6: 2803.

DOI: 10.1080/23802359.2021.1970643