Naming the untouchable – environmental sequences and niche partitioning as taxonomical evidence in fungi

Anna Rosling; Kerri Kluting; Jeanette Tångrot; Hector Urbina; Tea Ammunet; Shadi Eshghi Sahraei; Martin Rydén; Martin Ryberg; Anna Rosling

doi:10.1186/s43008-020-00045-9

Takashi Baba, Dai Hirose (2024)
Two novel Archaeorhizomyces species isolated from ericoid mycorrhizal roots and their association with ericaceous plants in vitro. Fungal Biology 128: 1939.

DOI: 10.1016/j.funbio.2024.05.011

Tom W. May, David L. Hawksworth (2024)
Proposals for consideration at IMC12 to modify provisions related solely to fungi in Chapter F of the International Code of Nomenclature for algae, fungi, and plants. IMA Fungus 15: .

DOI: 10.1186/s43008-024-00152-x

Kevin R. Thiele, Wendy L. Applequist, Susanne S. Renner, Tom W. May, Ali A. Dönmez, Quentin Groom, Samuli Lehtonen, Christine A. Maggs, Valéry Malécot, Hwan Su Yoon (2023)
DNA sequences as types: A discussion paper from the Special‐purpose Committee established at the XIX International Botanical Congress in Shenzhen, China. TAXON 72: 965.

DOI: 10.1002/tax.12931

Indunil C. Senanayake, Dhandevi Pem, Achala R. Rathnayaka, Subodini N. Wijesinghe, Saowaluck Tibpromma, Dhanushka N. Wanasinghe, Rungtiwa Phookamsak, Nuwan D. Kularathnage, Deecksha Gomdola, Dulanjalee Harishchandra, Lakmali S. Dissanayake, Mei-mei Xiang, Anusha H. Ekanayaka, Eric H. C. McKenzie, Kevin D. Hyde, Hao-xing Zhang, Ning Xie (2022)
Predicting global numbers of teleomorphic ascomycetes. Fungal Diversity 114: 237.

DOI: 10.1007/s13225-022-00498-w

Jonathan Cazabonne, Lachlan Bartrop, Glen Dierickx, Yusufjon Gafforov, Tina A. Hofmann, Thomas E. Martin, Meike Piepenbring, Mauro Rivas-Ferreiro, Danny Haelewaters (2022)
Molecular-Based Diversity Studies and Field Surveys Are Not Mutually Exclusive: On the Importance of Integrated Methodologies in Mycological Research. Frontiers in Fungal Biology 3: .

DOI: 10.3389/ffunb.2022.860777

Kerri Kluting, Ylva Strid, Diana Six, Anna Rosling (2023)
Forest Fire Influence on Tomicus piniperda-Associated Fungal Communities and Phloem Nutrient Availability of Colonized Pinus sylvestris. Microbial Ecology 86: 224.

DOI: 10.1007/s00248-022-02066-w

Mika H. Kirkhus, Andreas Frisch, Ann M. Evankow, Rakel Blaalid, Raffaele Zane, Mika Bendiksby, Marie L. Davey (2025)
Diversity of tremellalean Pertusaria-associated fungi in Norway and the role of secondary metabolites in host specificity. Fungal Biology 129: 101563.

DOI: 10.1016/j.funbio.2025.101563

Sajeewa S. N. Maharachchikumbura, Yanpeng Chen, Hiran A. Ariyawansa, Kevin D. Hyde, Danny Haelewaters, Rekhani H. Perera, Milan C. Samarakoon, Dhanushka N. Wanasinghe, Danilo E. Bustamante, Jian-Kui Liu, Daniel P. Lawrence, Ratchadawan Cheewangkoon, Marc Stadler (2021)
Integrative approaches for species delimitation in Ascomycota. Fungal Diversity 109: 155.

DOI: 10.1007/s13225-021-00486-6

Nathan Edward Charles Smith (2024)
Call me by your name: Considerations of DNA sequences as types within wider discussions on fungal nomenclature. Mycology 15: 137.

DOI: 10.1080/21501203.2023.2295412

Leho Tedersoo, Franco Magurno, Saad Alkahtani, Vladimir Mikryukov (2024)
Phylogenetic classification of arbuscular mycorrhizal fungi: new species and higher-ranking taxa in Glomeromycota and Mucoromycota (class Endogonomycetes). MycoKeys 107: 273.

DOI: 10.3897/mycokeys.107.125549

Martina Réblová, Miroslav Kolařík, Jana Nekvindová, Andrew N. Miller, Margarita Hernández-Restrepo (2021)
Phylogeny, Global Biogeography and Pleomorphism of Zanclospora. Microorganisms 9: 706.

DOI: 10.3390/microorganisms9040706

Mahwash Jamy, Charlie Biwer, Daniel Vaulot, Aleix Obiol, Hongmei Jing, Sari Peura, Ramon Massana, Fabien Burki (2022)
Global patterns and rates of habitat transitions across the eukaryotic tree of life. Nature Ecology & Evolution 6: 1458.

DOI: 10.1038/s41559-022-01838-4

Peter Meidl, Brendan Furneaux, Kassim I. Tchan, Kerri Kluting, Martin Ryberg, Marie-Laure Guissou, Bakary Soro, Aïssata Traoré, Gbamon Konomou, Nourou S. Yorou, Anna Rosling (2021)
Soil fungal communities of ectomycorrhizal dominated woodlands across West Africa. MycoKeys 81: 45.

DOI: 10.3897/mycokeys.81.66249

Kadri Runnel, Otto Miettinen, Asko Lõhmus (2021)
Polypore fungi as a flagship group to indicate changes in biodiversity – a test case from Estonia. IMA Fungus 12: .

DOI: 10.1186/s43008-020-00050-y

Li-Wei Zhou (2023)
Microbial taxonomy with DNA sequence data as nomenclatural type: How far should we go?. The Innovation Life 1: 100017.

DOI: 10.59717/j.xinn-life.2023.100017

R. Henrik Nilsson, Martin Ryberg, Christian Wurzbacher, Leho Tedersoo, Sten Anslan, Sergei Põlme, Viacheslav Spirin, Vladimir Mikryukov, Sten Svantesson, Martin Hartmann, Charlotte Lennartsdotter, Pauline Belford, Maryia Khomich, Alice Retter, Natàlia Corcoll, Daniela Gómez Martinez, Tobias Jansson, Masoomeh Ghobad-Nejhad, Duong Vu, Marisol Sanchez-Garcia, Erik Kristiansson, Kessy Abarenkov (2023)
How, not if, is the question mycologists should be asking about DNA-based typification. MycoKeys 96: 143.

DOI: 10.3897/mycokeys.96.102669

Shadi Eshghi Sahraei, Brendan Furneaux, Kerri Kluting, Mustafa Zakieh, Håkan Rydin, Håkan Hytteborn, Anna Rosling (2022)
Effects of operational taxonomic unit inference methods on soil microeukaryote community analysis using long‐read metabarcoding. Ecology and Evolution 12: .

DOI: 10.1002/ece3.8676

Duong Vu, R. Henrik Nilsson, Gerard J. M. Verkley (2022)
Dnabarcoder: An open‐source software package for analysing and predicting DNA sequence similarity cutoffs for fungal sequence identification. Molecular Ecology Resources 22: 2793.

DOI: 10.1111/1755-0998.13651

Robert Lücking, M. Catherine Aime, Barbara Robbertse, Andrew N. Miller, Takayuki Aoki, Hiran A. Ariyawansa, Gianluigi Cardinali, Pedro W. Crous, Irina S. Druzhinina, David M. Geiser, David L. Hawksworth, Kevin D. Hyde, Laszlo Irinyi, Rajesh Jeewon, Peter R. Johnston, Paul M. Kirk, Elaine Malosso, Tom W. May, Wieland Meyer, Henrik R. Nilsson, Maarja Öpik, Vincent Robert, Marc Stadler, Marco Thines, Duong Vu, Andrey M. Yurkov, Ning Zhang, Conrad L. Schoch (2021)
Fungal taxonomy and sequence-based nomenclature. Nature Microbiology 6: 540.

DOI: 10.1038/s41564-021-00888-x

Nalin N. Wijayawardene, Kevin D. Hyde, Kirill V. Mikhailov, Gábor Péter, André Aptroot, Carmen L. A. Pires-Zottarelli, Bruno T. Goto, Yuri S. Tokarev, Danny Haelewaters, Samantha C. Karunarathna, Paul M. Kirk, André L. C. M. de A. Santiago, Ramesh K. Saxena, Nathan Schoutteten, Madhara K. Wimalasena, Vladimir V. Aleoshin, Abdullah M. S. Al-Hatmi, Kahandawa G. S. U. Ariyawansa, Amanda R. Assunção, Thushara C. Bamunuarachchige, Hans-Otto Baral, D. Jayarama Bhat, Janusz Błaszkowski, Teun Boekhout, Nattawut Boonyuen, Michael Brysch-Herzberg, Bin Cao, Jonathan Cazabonne, Xue-Mei Chen, Claudia Coleine, Dong-Qin Dai, Heide-Marie Daniel, Suzana B. G. da Silva, Francisco Adriano de Souza, Somayeh Dolatabadi, Manish K. Dubey, Arun K. Dutta, Aseni Ediriweera, Eleonora Egidi, Mostafa S. Elshahed, Xinlei Fan, Juliana R. B. Felix, Mahesh C. A. Galappaththi, Marizeth Groenewald, Li-Su Han, Bo Huang, Vedprakash G. Hurdeal, Anastasia N. Ignatieva, Gustavo H. Jerônimo, Ana L. de Jesus, Serhii Kondratyuk, Jaturong Kumla, Martin Kukwa, Qirui Li, Juliana L. R. Lima, Xiao-Yong Liu, Wenhua Lu, H. Thorsten Lumbsch, Hugo Madrid, Franco Magurno, Guy Marson, Eric H. C. McKenzie, Audrius Menkis, Armin Mešić, Elaine C. R. Nascimento, Elena S. Nassonova, Yong Nie, Naasson V. L. Oliveira, Emilia A. Ossowska, Julia Pawłowska, Ursula Peintner, Igor R. Pozdnyakov, Bhagya M. Premarathne, A. K. Hasith Priyashantha, C. Alisha Quandt, Mariana B. Queiroz, Kunhiraman C. Rajeshkumar, Mubashar Raza, Niranjan Roy, Milan C. Samarakoon, Alessandra A. Santos, Lidiane A. Santos, Felix Schumm, Laura Selbmann, Faruk Selçuk, D. Rabern Simmons, Anastasia V. Simakova, Maudy Th. Smith, Onden Paraparath Sruthi, Nakarin Suwannarach, Kazuaki Tanaka, Saowaluck Tibpromma, Elias O. Tomás, Merve Ulukapı, Nicolas Van Vooren, Dhanushka N. Wanasinghe, Evi Weber, Qianzhen Wu, Er Fu Yang, Ryuichi Yoshioka, Noha H. Youssef, Annemarie Zandijk, Gui-Qing Zhang, Jin-Yong Zhang, Heng Zhao, RuiLin Zhao, Oleg A. Zverkov, Marco Thines, Sergey A. Karpov (2024)
Classes and phyla of the kingdom Fungi. Fungal Diversity 128: 1.

DOI: 10.1007/s13225-024-00540-z