The Collection of Zoosporic Eufungi at the University of Michigan (CZEUM): introducing a new repository of barcoded Chytridiomyceta and Blastocladiomycota cultures

Timothy James; Anne Bonds; Buck Castillo; Rebecca Clemons; Alex Glasco; Jillian Myers; Natasha Thapa; Peter Letcher; Martha Powell; Joyce Longcore; Timothy James

doi:10.1186/s43008-020-00041-z

Kadri Runnel, Kessy Abarenkov, Ovidiu Copoț, Vladimir Mikryukov, Urmas Kõljalg, Irja Saar, Leho Tedersoo (2022)
DNA barcoding of fungal specimens using PacBio long‐read high‐throughput sequencing. Molecular Ecology Resources 22: 2871.

DOI: 10.1111/1755-0998.13663

David Alors, Sammy Boussiba, Aliza Zarka (2021)
Paraphysoderma sedebokerense Infection in Three Economically Valuable Microalgae: Host Preference Correlates with Parasite Fitness. Journal of Fungi 7: 100.

DOI: 10.3390/jof7020100

Leho Tedersoo, Mads Albertsen, Sten Anslan, Benjamin Callahan, Irina S. Druzhinina (2021)
Perspectives and Benefits of High-Throughput Long-Read Sequencing in Microbial Ecology. Applied and Environmental Microbiology 87: .

DOI: 10.1128/AEM.00626-21

Ivana Eichlerová (2025)
The latest trends in cryopreservation of fungi. Mycological Progress 24: .

DOI: 10.1007/s11557-025-02036-9

Yanyan Yang, Stefanos Banos, Gunnar Gerdts, Antje Wichels, Marlis Reich (2021)
Mycoplankton Biome Structure and Assemblage Processes Differ Along a Transect From the Elbe River Down to the River Plume and the Adjacent Marine Waters. Frontiers in Microbiology 12: .

DOI: 10.3389/fmicb.2021.640469

Luis Javier Galindo, Thomas A. Richards, Jasmine A. Nirody (2024)
Evolutionarily diverse fungal zoospores show contrasting swimming patterns specific to ultrastructure. Current Biology 34: 4567.

DOI: 10.1016/j.cub.2024.08.016

Gustavo H. Jerônimo, D. Rabern Simmons, Kevin R. Amses, Kensuke Seto, Timothy Y. James, Carmen L. A. Pires-Zottarelli, Joyce E. Longcore (2022)
Phytochytrium and Sparrowiella, two new polycentric genera in Cladochytriales. Mycological Progress 21: .

DOI: 10.1007/s11557-022-01791-3

Aaron Pomerantz, Kristoffer Sahlin, Nina Vasiljevic, Adeline Seah, Marisa Lim, Emily Humble, Susan Kennedy, Henrik Krehenwinkel, Sven Winter, Rob Ogden, Stefan Prost (2022)
Rapid in situ identification of biological specimens via DNA amplicon sequencing using miniaturized laboratory equipment. Nature Protocols 17: 1415.

DOI: 10.1038/s41596-022-00682-x

Rebecca A. Clemons, Mark N. Yacoub, Evelyn Faust, L. Felipe Toledo, Thomas S. Jenkinson, Tamilie Carvalho, D. Rabern Simmons, Erik Kalinka, Lillian K. Fritz-Laylin, Timothy Y. James, Jason E. Stajich (2024)
An endogenous DNA virus in an amphibian-killing fungus associated with pathogen genotype and virulence. Current Biology 34: 1469.

DOI: 10.1016/j.cub.2024.02.062

D. Rabern Simmons, Joyce E. Longcore, Timothy Y. James (2021)
Polyrhizophydium stewartii, the first known rhizomycelial genus and species in the Rhizophydiales, is closely related to Batrachochytrium. Mycologia 113: 684.

DOI: 10.1080/00275514.2021.1885206

Vedprakash G. Hurdeal, Joyce E. Longcore, E.B. Gareth Jones, D. Rabern Simmons, Kevin D. Hyde, Eleni Gentekaki (2023)
Integrative approach to species delimitation in Rhizophydiales: Novel species of Angulomyces, Gorgonomyces, and Terramyces from northern Thailand. Molecular Phylogenetics and Evolution 180: 107706.

DOI: 10.1016/j.ympev.2023.107706

Mark S. Calabon, Kevin D. Hyde, E. B. Gareth Jones, Zong-Long Luo, Wei Dong, Vedprakash G. Hurdeal, Eleni Gentekaki, Walter Rossi, Marco Leonardi, Vinodhini Thiyagaraja, Anis S. Lestari, Hong-Wei Shen, Dan-Feng Bao, Nattawut Boonyuen, Ming Zeng (2022)
Freshwater fungal numbers. Fungal Diversity 114: 3.

DOI: 10.1007/s13225-022-00503-2

Caleb G. Schuler, Jill A. Mikucki (2023)
Microbial ecology and activity of snow algae within a Pacific Northwest snowpack. Arctic, Antarctic, and Alpine Research 55: .

DOI: 10.1080/15230430.2023.2233785

G. H. Jerônimo, D. R. Simmons, J. E. Longcore, T. Y. James, K. R. Amses, K. Seto, C. L. A. Pires-Zottarelli (2024)
Investigation of CZEUM cultures reveals new genera and species of Cladochytriales (Cladochytriomycetes, Chytridiomycota). Mycological Progress 23: .

DOI: 10.1007/s11557-023-01936-y

Kerstin Voigt, Timothy Y. James, Paul M. Kirk, André L. C. M. de A. Santiago, Bruce Waldman, Gareth W. Griffith, Minjie Fu, Renate Radek, Jürgen F. H. Strassert, Christian Wurzbacher, Gustavo Henrique Jerônimo, David R. Simmons, Kensuke Seto, Eleni Gentekaki, Vedprakash G. Hurdeal, Kevin D. Hyde, Thuong T. T. Nguyen, Hyang Burm Lee (2021)
Early-diverging fungal phyla: taxonomy, species concept, ecology, distribution, anthropogenic impact, and novel phylogenetic proposals. Fungal Diversity 109: 59.

DOI: 10.1007/s13225-021-00480-y

Thuong T. T. Nguyen, Sun Jeong Jeon, Do Young Song, Dong Hee Kim, Hyang Burm Lee (2025)
Exploring Diversity within Chytridiales and Rhizophydiales ( Chytridiomycota ) in Korea . Mycobiology 53: 27.

DOI: 10.1080/12298093.2024.2436204

Kevin R. Amses, D. Rabern Simmons, Joyce E. Longcore, Stephen J. Mondo, Kensuke Seto, Gustavo H. Jerônimo, Anne E. Bonds, C. Alisha Quandt, William J. Davis, Ying Chang, Brian A. Federici, Alan Kuo, Kurt LaButti, Jasmyn Pangilinan, William Andreopoulos, Andrew Tritt, Robert Riley, Hope Hundley, Jenifer Johnson, Anna Lipzen, Kerrie Barry, B. Franz Lang, Christina A. Cuomo, Nicolas E. Buchler, Igor V. Grigoriev, Joseph W. Spatafora, Jason E. Stajich, Timothy Y. James (2022)
Diploid-dominant life cycles characterize the early evolution of Fungi. Proceedings of the National Academy of Sciences 119: .

DOI: 10.1073/pnas.2116841119

Andrey Yurkov, Artur Alves, Feng-Yan Bai, Kyria Boundy-Mills, Pietro Buzzini, Neža Čadež, Gianluigi Cardinali, Serge Casaregola, Vishnu Chaturvedi, Valérie Collin, Jack W. Fell, Victoria Girard, Marizeth Groenewald, Ferry Hagen, Chris Todd Hittinger, Aleksey V. Kachalkin, Markus Kostrzewa, Vassili Kouvelis, Diego Libkind, Xinzhan Liu, Thomas Maier, Wieland Meyer, Gábor Péter, Marcin Piątek, Vincent Robert, Carlos A. Rosa, Jose Paulo Sampaio, Matthias Sipiczki, Marc Stadler, Takashi Sugita, Junta Sugiyama, Hiroshi Takagi, Masako Takashima, Benedetta Turchetti, Qi-Ming Wang, Teun Boekhout (2021)
Nomenclatural issues concerning cultured yeasts and other fungi: why it is important to avoid unneeded name changes. IMA Fungus 12: .

DOI: 10.1186/s43008-021-00067-x

Kensuke Seto, D. Rabern Simmons, C. Alisha Quandt, Thijs Frenken, Alden C. Dirks, Rebecca A. Clemons, Katelyn M. McKindles, R. Michael L. McKay, Timothy Y. James, Arturo Casadevall (2023)
A combined microscopy and single-cell sequencing approach reveals the ecology, morphology, and phylogeny of uncultured lineages of zoosporic fungi. mBio : .

DOI: 10.1128/mbio.01313-23