First two mitochondrial genomes for the order Filobasidiales reveal novel gene rearrangements and intron dynamics of Tremellomycetes

Qiang Li; Zhijie Bao; Ke Tang; Huiyu Feng; Wenying Tu; Lijiao Li; Yunlei Han; Mei Cao; Changsong Zhao

doi:10.1186/s43008-022-00094-2

Yu Lei, Ding Ding, Jihua Duan, Yi Luo, Feiyi Huang, Yankai Kang, Yingyu Chen, Saijun Li (2024)
Soil Microbial Community Characteristics and Their Effect on Tea Quality under Different Fertilization Treatments in Two Tea Plantations. Genes 15: 610.

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Peng Wu, Wenqi Xiao, Yingyong Luo, Zhuang Xiong, Xiaodie Chen, Jing He, Ajia Sha, Mingying Gui, Qiang Li (2023)
Comprehensive analysis of codon bias in 13 Ganoderma mitochondrial genomes. Frontiers in Microbiology 14: .

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Wei Gao, Xiaodie Chen, Jing He, Ajia Sha, Yingyong Luo, Wenqi Xiao, Zhuang Xiong, Qiang Li (2024)
Intraspecific and interspecific variations in the synonymous codon usage in mitochondrial genomes of 8 pleurotus strains. BMC Genomics 25: .

DOI: 10.1186/s12864-024-10374-3

Wei Gao, Shuyi Chen, Qiang Li (2024)
The first complete mitochondrial genome of Phellinus pomaceus var. prunastri (Pers.) Pat. 1926 (Hymenochaetales: Hymenochaetaceae) and phylogenetic analysis . Mitochondrial DNA Part B 9: 1674.

DOI: 10.1080/23802359.2024.2438275

Jin-Xin Ma, Hai-Jiao Li, Can Jin, Hao Wang, Lu-Xin Tang, Jing Si, Bao-Kai Cui (2025)
Assembly and comparative analysis of the complete mitochondrial genome of Daedaleopsis sinensis (Polyporaceae, Basidiomycota), contributing to understanding fungal evolution and ecological functions. IMA Fungus 16: .

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Zechen Mi, Jing Su, Liyan Yu, Tao Zhang (2024)
Comparative mitochondrial genomics of Thelebolaceae in Antarctica: insights into their extremophilic adaptations and evolutionary dynamics. IMA Fungus 15: .

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Qiang Li, Wenqi Xiao, Peng Wu, Ting Zhang, Peng Xiang, Qian Wu, Liang Zou, Mingying Gui (2023)
The first two mitochondrial genomes from Apiotrichum reveal mitochondrial evolution and different taxonomic assignment of Trichosporonales. IMA Fungus 14: .

DOI: 10.1186/s43008-023-00112-x

Qiang Li, Yingyong Luo, Ajia Sha, Wenqi Xiao, Zhuang Xiong, Xiaodie Chen, Jing He, Lianxin Peng, Liang Zou (2023)
Analysis of synonymous codon usage patterns in mitochondrial genomes of nine Amanita species. Frontiers in Microbiology 14: .

DOI: 10.3389/fmicb.2023.1134228

Yue Deng, Guangjiu Chen, Xuedong Bao, Jie He, Qiang Li (2024)
Characterization of the complete mitochondrial genome of Mucor indicus Lendn. 1930 (Mucorales: Mucoraceae), isolated from the wine fermentation system . Mitochondrial DNA Part B 9: 845.

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Jing He, Huijuan Qu, Youqiao Yu, Jingwei Huang (2024)
Characterization and phylogenetic analysis of the Talaromyces liani (kamyschko) Yilmaz, Frisvad & Samson, 2014 (Eurotiales: trichocomaceae) mitochondrial genome . Mitochondrial DNA Part B 9: 1201.

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Mingda He, Guangjiu Chen (2024)
Characterization of the complete mitochondrial genome of the medical fungus Ganoderma resinaceum Boud., 1889 (Polyporales: Ganoderma taceae) . Mitochondrial DNA Part B 9: 1291.

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Kajsa Himmelstrand, Mikael Brandström Durling, Magnus Karlsson, Jan Stenlid, Åke Olson (2023)
Multiple rearrangements and low inter- and intra-species mitogenome sequence variation in the Heterobasidion annosum s.l. species complex. Frontiers in Microbiology 14: .

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Qiang Li, Ting Zhang, Lijiao Li, Zhijie Bao, Wenying Tu, Peng Xiang, Qian Wu, Ping Li, Mei Cao, Wenli Huang (2022)
Comparative Mitogenomic Analysis Reveals Intraspecific, Interspecific Variations and Genetic Diversity of Medical Fungus Ganoderma. Journal of Fungi 8: 781.

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Wei Gao, Shuyi Chen, Qiang Li (2025)
Characterization and phylogenetic analysis of the complete mitochondrial genome of Fomitopsis palustris (Berk. & M.A. Curtis) Gilb. & Ryvarden, 1985 (Polyporales: Fomitopsidaceae) . Mitochondrial DNA Part B 10: 532.

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Mao-Qiang He, Bin Cao, Fei Liu, Teun Boekhout, Teodor T. Denchev, Nathan Schoutteten, Cvetomir M. Denchev, Martin Kemler, Sergio P. Gorjón, Dominik Begerow, Ricardo Valenzuela, Naveed Davoodian, Tuula Niskanen, Alfredo Vizzini, Scott A. Redhead, Virginia Ramírez-Cruz, Viktor Papp, Vasiliy A. Dudka, Arun Kumar Dutta, Ricardo García-Sandoval, Xin-Zhan Liu, Teeratas Kijpornyongpan, Anton Savchenko, Leho Tedersoo, Bart Theelen, Larissa Trierveiler-Pereira, Fang Wu, Juan Carlos Zamora, Xiang-Yu Zeng, Li-Wei Zhou, Shi-Liang Liu, Masoomeh Ghobad-Nejhad, Admir J. Giachini, Guo-Jie Li, Makoto Kakishima, Ibai Olariaga, Danny Haelewaters, Bobby Sulistyo, Junta Sugiyama, Sten Svantesson, Andrey Yurkov, Pablo Alvarado, Vladimír Antonín, André Felipe da Silva, Irina Druzhinina, Tatiana B. Gibertoni, Laura Guzmán-Dávalos, Alfredo Justo, Samantha C. Karunarathna, Mahesh C. A. Galappaththi, Merje Toome-Heller, Tsuyoshi Hosoya, Kare Liimatainen, Rodrigo Márquez, Armin Mešić, Jean-Marc Moncalvo, László G. Nagy, Torda Varga, Takamichi Orihara, Tania Raymundo, Isabel Salcedo, Alexandre G. S. Silva-Filho, Zdenko Tkalčec, Felipe Wartchow, Chang-Lin Zhao, Tolgor Bau, Milay Cabarroi-Hernández, Alonso Cortés-Pérez, Cony Decock, Ruben De Lange, Michael Weiss, Nelson Menolli, R. Henrik Nilsson, Yu-Guang Fan, Annemieke Verbeken, Yusufjon Gafforov, Angelina Meiras-Ottoni, Renato L. Mendes-Alvarenga, Nian-Kai Zeng, Qi Wu, Kevin D. Hyde, Paul M. Kirk, Rui-Lin Zhao (2024)
Phylogenomics, divergence times and notes of orders in Basidiomycota. Fungal Diversity 126: 127.

DOI: 10.1007/s13225-024-00535-w

Qiang Li, Lijiao Li, Ting Zhang, Peng Xiang, Qian Wu, Wenying Tu, Zhijie Bao, Liang Zou, Cheng Chen (2022)
The first two mitochondrial genomes for the genus Ramaria reveal mitochondrial genome evolution of Ramaria and phylogeny of Basidiomycota. IMA Fungus 13: .

DOI: 10.1186/s43008-022-00100-7

Yue Deng, Guangjiu Chen, Xuedong Bao, Jie He, Qiang Li (2024)
Mitochondrial genomic characteristics and phylogenetic analysis of a brewing fungus, Rhizopus microsporus Tiegh. 1875 (Mucorales: Rhizopodaceae) . Mitochondrial DNA Part B 9: 657.

DOI: 10.1080/23802359.2024.2356133

Yue Deng, Guangjiu Chen, Xuedong Bao, Jie He (2024)
Characterization and phylogenetic analysis of the complete mitochondrial genome of Saccharomycopsis fibuligera (lindner) Klocker 1907 (saccharomycetales: saccharomycopsidaceae) . Mitochondrial DNA Part B 9: 743.

DOI: 10.1080/23802359.2024.2364756

Xiaoyun Chang, Xiang Li, Zengzhi Li, Nigel Hywel-Jones, Guangshuo Li, Mingjun Chen (2024)
Comparative Mitogenomics Analysis Revealed Evolutionary Divergence among Purpureocillium Species and Gene Arrangement and Intron Dynamics of Ophiocordycipitaceae. Microorganisms 12: 2053.

DOI: 10.3390/microorganisms12102053