The first two mitochondrial genomes for the genus Ramaria reveal mitochondrial genome evolution of Ramaria and phylogeny of Basidiomycota

Qiang Li; Lijiao Li; Ting Zhang; Peng Xiang; Qian Wu; Wenying Tu; Zhijie Bao; Liang Zou; Cheng Chen

doi:10.1186/s43008-022-00100-7

Wei Gao, Shuyi Chen, Qiang Li (2025)
Characterization and phylogenetic analysis of the complete mitochondrial genome of Fomitopsis palustris (Berk. & M.A. Curtis) Gilb. & Ryvarden, 1985 (Polyporales: Fomitopsidaceae) . Mitochondrial DNA Part B 10: 532.

DOI: 10.1080/23802359.2025.2509806

Yue Deng, Guangjiu Chen, Xuedong Bao, Jie He, Qiang Li (2024)
Characterization of the complete mitochondrial genome of Mucor indicus Lendn. 1930 (Mucorales: Mucoraceae), isolated from the wine fermentation system . Mitochondrial DNA Part B 9: 845.

DOI: 10.1080/23802359.2024.2371376

Mao-Qiang He, Bin Cao, Fei Liu, Teun Boekhout, Teodor T. Denchev, Nathan Schoutteten, Cvetomir M. Denchev, Martin Kemler, Sergio P. Gorjón, Dominik Begerow, Ricardo Valenzuela, Naveed Davoodian, Tuula Niskanen, Alfredo Vizzini, Scott A. Redhead, Virginia Ramírez-Cruz, Viktor Papp, Vasiliy A. Dudka, Arun Kumar Dutta, Ricardo García-Sandoval, Xin-Zhan Liu, Teeratas Kijpornyongpan, Anton Savchenko, Leho Tedersoo, Bart Theelen, Larissa Trierveiler-Pereira, Fang Wu, Juan Carlos Zamora, Xiang-Yu Zeng, Li-Wei Zhou, Shi-Liang Liu, Masoomeh Ghobad-Nejhad, Admir J. Giachini, Guo-Jie Li, Makoto Kakishima, Ibai Olariaga, Danny Haelewaters, Bobby Sulistyo, Junta Sugiyama, Sten Svantesson, Andrey Yurkov, Pablo Alvarado, Vladimír Antonín, André Felipe da Silva, Irina Druzhinina, Tatiana B. Gibertoni, Laura Guzmán-Dávalos, Alfredo Justo, Samantha C. Karunarathna, Mahesh C. A. Galappaththi, Merje Toome-Heller, Tsuyoshi Hosoya, Kare Liimatainen, Rodrigo Márquez, Armin Mešić, Jean-Marc Moncalvo, László G. Nagy, Torda Varga, Takamichi Orihara, Tania Raymundo, Isabel Salcedo, Alexandre G. S. Silva-Filho, Zdenko Tkalčec, Felipe Wartchow, Chang-Lin Zhao, Tolgor Bau, Milay Cabarroi-Hernández, Alonso Cortés-Pérez, Cony Decock, Ruben De Lange, Michael Weiss, Nelson Menolli, R. Henrik Nilsson, Yu-Guang Fan, Annemieke Verbeken, Yusufjon Gafforov, Angelina Meiras-Ottoni, Renato L. Mendes-Alvarenga, Nian-Kai Zeng, Qi Wu, Kevin D. Hyde, Paul M. Kirk, Rui-Lin Zhao (2024)
Phylogenomics, divergence times and notes of orders in Basidiomycota. Fungal Diversity 126: 127.

DOI: 10.1007/s13225-024-00535-w

Yue Deng, Guangjiu Chen, Xuedong Bao, Jie He, Qiang Li (2024)
Mitochondrial genomic characteristics and phylogenetic analysis of a brewing fungus, Rhizopus microsporus Tiegh. 1875 (Mucorales: Rhizopodaceae) . Mitochondrial DNA Part B 9: 657.

DOI: 10.1080/23802359.2024.2356133

Xianyi Wang, Zhongyao Guo, Jiawei Tao, Gongyou Zhang, Guoyu Wang, Yaping Wang, Yaohang Long, Hongmei Liu (2025)
Phylogenetic Relationships of Three Ramaria Species Based on Mitochondrial Genome Analysis. Ecology and Evolution 15: .

DOI: 10.1002/ece3.70901

Mingda He, Guangjiu Chen (2024)
Characterization of the complete mitochondrial genome of the medical fungus Ganoderma resinaceum Boud., 1889 (Polyporales: Ganoderma taceae) . Mitochondrial DNA Part B 9: 1291.

DOI: 10.1080/23802359.2024.2410449

Wei Gao, Xiaodie Chen, Jing He, Ajia Sha, Yingyong Luo, Wenqi Xiao, Zhuang Xiong, Qiang Li (2024)
Intraspecific and interspecific variations in the synonymous codon usage in mitochondrial genomes of 8 pleurotus strains. BMC Genomics 25: .

DOI: 10.1186/s12864-024-10374-3

Wei Gao, Shuyi Chen, Qiang Li (2024)
The first complete mitochondrial genome of Phellinus pomaceus var. prunastri (Pers.) Pat. 1926 (Hymenochaetales: Hymenochaetaceae) and phylogenetic analysis . Mitochondrial DNA Part B 9: 1674.

DOI: 10.1080/23802359.2024.2438275

Yutao Huang, Huanwei Wang, Siyan Huo, Jinpeng Lu, Justice Norvienyeku, Weiguo Miao, Chunxiu Qin, Wenbo Liu (2024)
Comparative Mitogenomics Analysis Revealed Evolutionary Divergence among Neopestalotiopsis Species Complex (Fungi: Xylariales). International Journal of Molecular Sciences 25: 3093.

DOI: 10.3390/ijms25063093

Qiang Li, Wenqi Xiao, Peng Wu, Ting Zhang, Peng Xiang, Qian Wu, Liang Zou, Mingying Gui (2023)
The first two mitochondrial genomes from Apiotrichum reveal mitochondrial evolution and different taxonomic assignment of Trichosporonales. IMA Fungus 14: .

DOI: 10.1186/s43008-023-00112-x

Qiang Li, Yingyong Luo, Ajia Sha, Wenqi Xiao, Zhuang Xiong, Xiaodie Chen, Jing He, Lianxin Peng, Liang Zou (2023)
Analysis of synonymous codon usage patterns in mitochondrial genomes of nine Amanita species. Frontiers in Microbiology 14: .

DOI: 10.3389/fmicb.2023.1134228

Xiaoyun Chang, Xiang Li, Zengzhi Li, Nigel Hywel-Jones, Guangshuo Li, Mingjun Chen (2024)
Comparative Mitogenomics Analysis Revealed Evolutionary Divergence among Purpureocillium Species and Gene Arrangement and Intron Dynamics of Ophiocordycipitaceae. Microorganisms 12: 2053.

DOI: 10.3390/microorganisms12102053

Xinzheng Song, Yuehua Geng, Chao Xu, Jiaxin Li, Yashuang Guo, Yan Shi, Qingzhou Ma, Qiang Li, Meng Zhang (2024)
The complete mitochondrial genomes of five critical phytopathogenic Bipolaris species: features, evolution, and phylogeny. IMA Fungus 15: .

DOI: 10.1186/s43008-024-00149-6

Jing He, Huijuan Qu, Youqiao Yu, Jingwei Huang (2024)
Characterization and phylogenetic analysis of the Talaromyces liani (kamyschko) Yilmaz, Frisvad & Samson, 2014 (Eurotiales: trichocomaceae) mitochondrial genome . Mitochondrial DNA Part B 9: 1201.

DOI: 10.1080/23802359.2024.2403409

Chengjie Xiong, Yongsheng Lin, Nemat O. Keyhani, Junya Shang, Yuchen Mao, Jiao Yang, Minghai Zheng, Lixia Yang, Huili Pu, Longbing Lin, Taichang Mu, Mengjia Zhu, Ziyi Wu, Zhenxing Qiu, Wen Xiong, Xiayu Guan, Junzhi Qiu (2025)
Mitochondrial Genomes from Fungal the Entomopathogenic Moelleriella Genus Reveals Evolutionary History, Intron Dynamics and Phylogeny. Journal of Fungi 11: 94.

DOI: 10.3390/jof11020094

Yue Deng, Guangjiu Chen, Xuedong Bao, Jie He (2024)
Characterization and phylogenetic analysis of the complete mitochondrial genome of Saccharomycopsis fibuligera (lindner) Klocker 1907 (saccharomycetales: saccharomycopsidaceae) . Mitochondrial DNA Part B 9: 743.

DOI: 10.1080/23802359.2024.2364756

Peng Wu, Wenqi Xiao, Yingyong Luo, Zhuang Xiong, Xiaodie Chen, Jing He, Ajia Sha, Mingying Gui, Qiang Li (2023)
Comprehensive analysis of codon bias in 13 Ganoderma mitochondrial genomes. Frontiers in Microbiology 14: .

DOI: 10.3389/fmicb.2023.1170790