Comparative genomic study of the Penicillium genus elucidates a diverse pangenome and 15 lateral gene transfer events

Kåre L. Nielsen; Trine Sørensen; Mikkel Nielsen; Teis Sondergaard; Jens Sørensen; David Fitzpatrick; Jens Frisvad; Kåre Nielsen

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Dianiris Luciano-Rosario, Wayne M. Jurick, Christopher Gottschalk (2024)
The Near-Gapless Penicillium fuscoglaucum Genome Enables the Discovery of Lifestyle Features as an Emerging Post-Harvest Phytopathogen. Journal of Fungi 10: 430.

DOI: 10.3390/jof10060430

Jessica Gil-Serna, Covadonga Vazquez, Belén Patiño (2024)
The relevance of genomics in food mycology with a focus on food safety. Current Opinion in Food Science 59: 101213.

DOI: 10.1016/j.cofs.2024.101213

Yuan-Ni Ning, Di Tian, Shuai Zhao, Jia-Xun Feng (2024)
Regulation of genes encoding polysaccharide-degrading enzymes in Penicillium. Applied Microbiology and Biotechnology 108: .

DOI: 10.1007/s00253-023-12892-8

Ivo Roxo, António Amaral, António Portugal, João Trovão (2024)
Draft genome sequence and comparative genomic analysis of Penicillium pancosmium MUM 23.27 isolated from raw honey. Archives of Microbiology 206: .

DOI: 10.1007/s00203-023-03766-8

Mikkel Rank Nielsen, Trine Sørensen, Tobias Bruun Pedersen, Klaus Ringsborg Westphal, Lorena Díaz Fernández De Quincoces, Teis Esben Sondergaard, Reinhard Wimmer, Daren W. Brown, Jens Laurids Sørensen (2024)
Final piece to the Fusarium pigmentation puzzle – Unraveling of the phenalenone biosynthetic pathway responsible for perithecial pigmentation in the Fusarium solani species complex. Fungal Genetics and Biology 174: 103912.

DOI: 10.1016/j.fgb.2024.103912

João Trovão, Fabiana Soares, Diana Sofia Paiva, António Portugal (2024)
Morpho-Molecular and Genomic Characterization of Penicillium mexicanum Isolates Retrieved from a Forsaken Gold Mine. Applied Sciences 14: 10600.

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Alinta Furnell, Nicole Benaud, Xabier Vázquez-Campos, Edward C.Y. Liew, Allison Mertin, Jordan A. Vink, Kate Montgomery, Marc R. Wilkins, Brett A. Summerell, Belinda C. Ferrari (2025)
Penicillium psychrofluorescens sp. nov., a naturally autofluorescent Antarctic fungus . Mycology : 1.

DOI: 10.1080/21501203.2024.2421319

Michel Flipphi, Alexandra Márton, Vivien Bíró, Norbert Ág, Erzsébet Sándor, Erzsébet Fekete, Levente Karaffa (2023)
Generation, Transfer, and Loss of Alternative Oxidase Paralogues in the Aspergillaceae Family. Journal of Fungi 9: 1195.

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Ana Cristina Barragan, Sergio M Latorre, Angus Malmgren, Adeline Harant, Joe Win, Yu Sugihara, Hernán A Burbano, Sophien Kamoun, Thorsten Langner, Heather Hendrickson (2024)
Multiple Horizontal Mini-chromosome Transfers Drive Genome Evolution of Clonal Blast Fungus Lineages. Molecular Biology and Evolution 41: .

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Cobus M. Visagie, Donato Magistà, Massimo Ferrara, Felipe Balocchi, Tuan A. Duong, Ales Eichmeier, David Gramaje, Janneke Aylward, Scott E. Baker, Irene Barnes, Sara Calhoun, Maria De Angelis, Jens C. Frisvad, Eliska Hakalova, Richard D. Hayes, Jos Houbraken, Igor V. Grigoriev, Kurt LaButti, Catarina Leal, Anna Lipzen, Vivian Ng, Jasmyn Pangilinan, Jakub Pecenka, Giancarlo Perrone, Anja Piso, Emily Savage, Milan Spetik, Michael J. Wingfield, Yu Zhang, Brenda D. Wingfield (2023)
IMA genome-F18. IMA Fungus 14: .

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Andrew S. Urquhart, Emile Gluck-Thaler, Aaron A. Vogan (2024)
Gene acquisition by giant transposons primes eukaryotes for rapid evolution via horizontal gene transfer. Science Advances 10: .

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Holly P. Bartholomew, Christopher Gottschalk, Bret Cooper, Michael R. Bukowski, Ronghui Yang, Verneta L. Gaskins, Dianiris Luciano-Rosario, Jorge M. Fonseca, Wayne M. Jurick (2024)
Omics-Based Comparison of Fungal Virulence Genes, Biosynthetic Gene Clusters, and Small Molecules in Penicillium expansum and Penicillium chrysogenum. Journal of Fungi 11: 14.

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Padraic G. Heneghan, Letal I. Salzberg, Kenneth H. Wolfe (2025)
Zymocin-like killer toxin gene clusters in the nuclear genomes of filamentous fungi. Fungal Genetics and Biology 176: 103957.

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Amol M. Sawant, Vishwambar D. Navale, Koteswara Rao Vamkudoth (2024)
Genome sequencing and analysis of penicillin V producing Penicillium rubens strain BIONCL P45 isolated from India. International Microbiology 27: 1473.

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Clementine Lem Azinue, Evelyn Bi Manju, Grace Annih Mbong, Rosemary Kinge Tonjock (2024)
Identification and phylogenetic relationship of fungal species associated with cassava leaves (Manihot esculenta Crantz.) in Bamenda, (Northwest Region) Cameroon.. African Journal of Agricultural Research 20: 667.

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Cancan Wang, Ye Fan, Chenjie Wang, Jing Tang, Yixian Qiu, Keren Xu, Yingjia Ding, Ying Liu, Youmin Ying, Hong Wang (2024)
Discovery of Prenyltransferase-Guided Hydroxyphenylacetic Acid Derivatives from Marine Fungus Penicillium sp. W21C371. Marine Drugs 22: 296.

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Luiz Marcelo Ribeiro Tomé, Gabriel Quintanilha-Peixoto, Diogo Henrique Costa-Rezende, Carlos A. Salvador-Montoya, Domingos Cardoso, Daniel S. Araújo, Jorge Marcelo Freitas, Gabriela Bielefeld Nardoto, Genivaldo Alves-Silva, Elisandro Ricardo Drechsler-Santos, Aristóteles Góes-Neto, Alexandre Alanio, David S. Hibbett (2024)
Comparative genomics and stable isotope analysis reveal the saprotrophic-pathogenic lifestyle of a neotropical fungus. mBio 15: .

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