Research Article |
Corresponding author: Tieyao Tu ( tutieyao@scbg.ac.cn ) Corresponding author: Yonglong Wang ( wylongceltics@163.com ) Corresponding author: Xin Qian ( qxxb2006@163.com ) Academic editor: César Marín
© 2025 Taotao Wei, Huiguang Zhang, Shunfen Wang, Chunping Wu, Tieyao Tu, Yonglong Wang, Xin Qian.
This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Citation:
Wei T, Zhang H, Wang S, Wu C, Tu T, Wang Y, Qian X (2025) Divergent altitudinal patterns of arbuscular and ectomycorrhizal fungal communities in a mid-subtropical mountain ecosystem. IMA Fungus 16: e140187. https://doi.org/10.3897/imafungus.16.140187
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Arbuscular mycorrhizal fungi (AMF) and ectomycorrhizal fungi (EMF) form ubiquitous symbiotic relationships with plants through co-evolutionary processes, providing multiple benefits for plant growth, productivity, health, and stress mitigation. Mountain ecosystem multifunctionality is significantly influenced by mycorrhizal responses to climate change, highlighting the importance of understanding the complex interactions between these fungi and environmental variables. In this study, we investigated five vegetation zones across an altitudinal gradient (675–2157 m a.s.l.) in Wuyi Mountain, one of the most well-preserved mid-subtropical mountain ecosystems in eastern China. Using high-throughput sequencing, we examined the altitudinal distribution patterns, community assembly mechanisms, and network interactions of soil AMF and EMF. Our analyses demonstrated significant altitudinal variations in the composition and diversity of mycorrhizal fungal communities. AMF richness peaked in the subalpine dwarf forest at intermediate elevations, whereas EMF richness was highest in the low-altitude evergreen broad-leaved forest, showing a marked decrease in the alpine meadow ecosystem. β-diversity decomposition revealed that species turnover constituted the primary mechanism of community differentiation for both fungal types, explaining >56% of the observed variation. Stochastic processes dominated community assembly, with the relative importance of dispersal limitation and drift showing distinct altitudinal patterns. Network analysis indicated that AMF networks reached maximum complexity in evergreen broad-leaved forests, while EMF networks showed similar complexity levels in coniferous forests. Among the examined factors, soil properties emerged as the predominant driver of altitudinal variations in ecosystem multifunctionality, followed by AMF communities and climatic variables. These findings provide critical insights into the ecological functions and environmental adaptations of mycorrhizal fungi, advancing our understanding of their responses to environmental changes in mountain ecosystems and informing evidence-based conservation strategies.
Altitudinal gradient, community structure, ecosystem multifunctionality, fungal diversity, Mycorrhizal fungi
In terrestrial ecosystems, numerous fungal species establish intricate interactions with the root systems of various terrestrial plants, forming highly specialized and mutually beneficial symbiotic relationships known as mycorrhizae (
In the mycorrhizal symbiotic system, vegetation maintains nutrient homeostasis by assimilating soil elements mobilized through mycorrhizal fungal activity (
Given the crucial ecological functions of mycorrhizal fungi, investigations into their community structures have garnered substantial attention in soil mycological research. These community structures are influenced by environmental factors through both direct and indirect mechanisms. Empirical studies have demonstrated significant environmental influences:
Mountain ecosystems characterized by significant altitudinal gradients, which induce marked variations in soil properties and plant communities, offer exceptional natural laboratories for exploring the influence of external factors on mycorrhizal fungi (
Community assembly mechanisms constitute a fundamental aspect in understanding fungal community structure dynamics. Two predominant theoretical frameworks currently guide this research domain. The niche theory emphasizes that deterministic processes—including species-specific traits, interspecific interactions, and environmental filtering—play a primary role in shaping community assembly (
Ecosystem multifunctionality, a pivotal ecological metric, quantifies the ability of an ecosystem to sustain multiple functions concurrently, such as nutrient cycling and organic matter decomposition (
Wuyi Mountain is a globally significant biodiversity hotspot and represents one of the most intact mid-subtropical mountain ecosystems in eastern China. Its pronounced altitudinal gradients, favorable climate, and exceptional biodiversity establish it as an ideal natural laboratory for advanced microbiological research (
Our study was conducted in the Wuyi Mountain National Nature Reserve (27°73′–27°86′N, 117°69′–117°78′E), located in the northwestern region of Fujian Province, China (Suppl. material
At each altitudinal level, three replicate study plots (20 m × 20 m) were systematically established. Each plot was subsequently divided into 16 contiguous quadrats (5 m × 5 m) through grid-based partitioning, with division boundaries precisely aligned at 5-meter intervals along both the × and y axes. A comprehensive tree survey was carried out within each quadrat. Three quadrats were randomly selected, and within each, five soil samples were collected from a depth of 0–15 cm in an S-shaped pattern. These samples were then homogenized and mixed to form a single composite sample. The samples were placed in sterile polyethylene bags, stored in an icebox, and transported to the laboratory within one day. Each composite sample was split into two subsamples: one for analysis of soil physicochemical properties and enzyme activities, and the other for storage at -80°C for total DNA extraction. The geographic coordinates of each sampling point were recorded using a global positioning system. Leaf Area Index (LAI), Enhanced Vegetation Index (EVI), and Normalized Difference Vegetation Index (NDVI) data were obtained from the LAADS DAAC (https://ladsweb.modaps.eosdis.nasa.gov) and extracted by latitude and longitude using the Environment for Visualizing Images software (Suppl. material
The concentrations of soil total carbon (TC) and total nitrogen (TN) were analyzed using an elemental analyzer (FLASH SMART; Shanghai, China). Total phosphorus (TP) concentration was determined by alkali fusion molybdenum-antimony resistance spectrophotometry (
The activities of soil enzymes were assessed as follows: urease activity was measured using indigo colorimetry, acid phosphatase activity by 2,3,5-triphenyl tetrazolium chloride colorimetry, dehydrogenase activity by triphenyltetrazolium chloride colorimetry, and leucine aminopeptidase activity by p-nitroaniline colorimetry. Cellulase and sucrase activities were determined using 3,5-dinitrosalicylic acid colorimetry, while β-1,4-glucosidase, β-1,4-N-acetylglucosaminidase, and β-xylosidase activities were quantified using the p-nitrophenol method (
Total DNA was extracted from soil samples using the Fast DNA™ Spin Kit for Soil (MP Biomedicals, California, USA) following the manufacturer’s protocol. The concentration and quality of the extracted DNA were evaluated by 1% agarose gel electrophoresis. For fungal community analysis, the ITS1 region of the rRNA gene was amplified using the primer pair ITS1F (CTTGGTCATTTAGAGGAAGTAA) and ITS2R (GCTGCGTTCTTCATCGATGC) (
For AMF, the V4–V5 hypervariable regions of the 18S rRNA gene were amplified using a nested PCR approach. The first round of PCR utilized the primer pair AML1F (ATCAACTTTCGATGGTAGGATAGA) and AML2R (GAACCCAAACACTTTGGTTTCC) (
The PCR products were initially visualized on a 2% agarose gel and subsequently quantified using the QuantiFluor™-ST Blue fluorescence quantification system (Promega, Madison, USA). Based on the quantification results, the PCR products were pooled in equimolar ratios according to the sequencing requirements for each sample. Sequencing libraries were prepared using the TruSeq™ DNA Sample Prep Kit (Sangon Biotech, Shanghai, China) and sequenced on the Illumina HiSeq 2500 platform (Illumina, Inc., San Diego, USA) at Majorbio Co. (Shanghai, China).
Paired-end reads generated on the Illumina platform were first merged using FLASH version 1.2.11 (
Most data analyses in this study were performed using R (version 4.2.2). The α-diversity and phylogenetic diversity of mycorrhizal fungi were calculated using the “vegan” (version 2.7-0) and “picante” (version 1.8.2) R packages (
Fungal community assembly mechanisms were elucidated by quantitatively evaluating the relative contributions of distinct ecological processes using the “iCAMP” package (version 1.5.12). In this framework, a βNRI value < -1.96 indicates homogeneous selection, while a βNRI value > 1.96 signifies heterogeneous selection. When |βNRI| ≤ 1.96 and the Raup-Crick (RC) value < -0.95, the process is identified as homogeneous dispersal. Conversely, |βNRI| ≤ 1.96 and RC > 0.95 suggest dispersal limitation. Finally, |βNRI| ≤ 1.96 and |RC| ≤ 0.95 are indicative of ecological drift (
To investigate interactions within mycorrhizal fungal communities, co-occurrence networks were constructed using the weighted gene co-expression network analysis (WGCNA) framework in R (
Functional diversity metrics—including functional divergence and functional evenness—were calculated for mycorrhizal fungi based on community traits (e.g., richness, Shannon diversity, phylogenetic diversity, mean pairwise distance, network modularity, network density, node count, and edge count) and environmental preferences (e.g., pH, soil moisture content, MAT, and EC) using the “FD” package (version 1.0-12.3) (
The influence of environmental factors on mycorrhizal fungal diversity was assessed using the Mantel test, implemented with the “linkET” package (version 0.0.7.3) (
AMF were classified into five distinct orders, with Glomerales exhibiting the highest relative abundance, ranging from 79.14% to 97.70%. This order was most abundant in EBF at lower altitudes and least abundant in SDF at intermediate altitudes. Diversisporales followed, with a relative abundance ranging from 1.79% to 19.12% (Suppl. material
AMF richness peaked significantly in SDF at intermediate altitudes (Fig.
Altitudinal variation in mycorrhizal fungal richness and community differentiation. Richness of various taxa of mycorrhizal fungi including Arbuscular (A), Glomerales (B), Diversisporales (C), ectomycorrhizal fungi (D), Basidiomycota (E), and Ascomycota (F) across five altitudinal gradient zones. Community differences among arbuscular and ectomycorrhizal fungi are shown in G and H, respectively, while I and J depict the decomposition of β-diversity within these fungal communities. Repl: replacement; RichDiff: richness difference.
AMF richness showed no significant correlation with altitude (P = 0.601) (Suppl. material
Further analyses examined the influence of altitude on mycorrhizal fungal community diversity and its associations with environmental variables. The richness of Diversisporales showed significant correlations with soil moisture content, MAT, precipitation, and the EVI (P < 0.05) (Suppl. material
Influence of environmental variables on mycorrhizal fungal diversity and function. Environmental factors impact the functional diversity of arbuscular mycorrhizal fungi (A), richness (B), phylogenetic diversity (C), and functional evenness (D) of ectomycorrhizal fungi. TC: total carbon; TN: total nitrogen; TP: total phosphorus; OM: organic matter; MBC: microbial biomass carbon; MBN: microbial biomass nitrogen; MBP: microbial biomass phosphorus; NO3._N: nitrate nitrogen; NH4._N: ammonium nitrogen; EC: electric conductivity; MC_F: fresh soil moisture content; MC_AD: air-dried soil moisture content; MAT: mean annual temperature; MAP: mean annual precipitation; CL: cellulase; UE: urease; SC: sucrase; ACP: acid phosphatase; β-GC: β-1,4-glucosidase; DHA: dehydrogenase; NAG: β-1,4-N-acetylglucosaminidase; β-XYS: β-xylosidase; LAP: Leucine aminopeptidase.
The iCAMP analysis revealed that dispersal limitation and ecological drift were the primary drivers structuring the assembly of the two distinct mycorrhizal fungal communities, collectively accounting for over 86.50% of the observed assembly processes (Suppl. material
Dominance of ecological processes in mycorrhizal fungal community assembly. The relative importance of heterogeneous selection, homogeneous selection, dispersal limitation, homogenizing dispersal, and drift in shaping arbuscular (A) and ectomycorrhizal (B) fungal communities. HeS: heterogeneous selection; HoS: homogeneous selection; DL: dispersal limitation; HD: homogenizing dispersal; DR: drift.
SPEC-OCCU plot analyses revealed that AMF and EMF OTUs across various altitudes did not cluster within specific x-axis columns, indicating a high diversity of occupancy characteristics at different elevations (Suppl. material
Within the AMF community, Glomerales were identified as potential keystone taxa across all forest belts. Diversisporales appeared at intermediate altitudes in CF and SDF, and at the highest altitudes in ALM, while Archaeosporales were exclusively observed in SDF at intermediate altitudes (Suppl. material
Co-occurrence networks for AMF and EMF consisted of 665 and 281 nodes, respectively, connected by 6,302 and 1,416 edges (Fig.
Co-occurrence networks of mycorrhizal fungal communities across different ecosystems. Total and specific community networks of arbuscular and ectomycorrhizal fungi in various forest types (A–L), with analysis of the relationship between network topological features and environmental factors for arbuscular (M) and ectomycorrhizal fungi (N). EBF: evergreen broad-leaved forest; CBMF: coniferous and broad-leaved mixed forest; CF: coniferous forest; SDF: subalpine dwarf forest; ALM: alpine meadow. ACC: average clustering coefficient; APL: average path length.
Further analysis revealed relationships between network topology and environmental factors. In the AMF network, modularity was significantly associated with cellulase, urease, acid phosphatase, and soil moisture content. Network density showed strong correlations with urease, β-xylosidase, acid phosphatase, MBN, soil moisture content, and LAI. Diameter was significantly linked to dehydrogenase, MAT, precipitation, and EVI. Additionally, average path length correlated with TP, while nodes demonstrated significant associations with NO3−-N and EC (Fig.
Ecosystem multifunctionality demonstrated significant variation along altitudinal gradients, with the highest levels observed in the ALM at the highest elevation and the lowest levels in the CBMF at intermediate elevations. To elucidate the drivers of this variability, we employed a SEM and analyzed the associated path coefficients. The results revealed both direct and indirect effects of multiple factors on multifunctionality. Soil properties emerged as the most influential factor, exhibiting a strong direct effect (0.697) and a moderate indirect effect (0.273). AMF also showed a substantial direct effect (0.697) (Fig.
The relationships between ecosystem multifunctionality and environmental factors across altitudinal gradients. A, B direct and indirect effects of environmental factors on multifunctionality; C relative importance of individual environmental factors. EBF: evergreen broad-leaved forest; CBMF: coniferous and broad-leaved mixed forest; CF: coniferous forest; SDF: subalpine dwarf forest; ALM: alpine meadow; MC_F: fresh soil moisture content; MC_AD: air-dried soil moisture content; MAT: mean annual temperature; MAP: mean annual precipitation; AMF_PD; arbuscular mycorrhizal fungal phylogenetic diversity; AMF_rich: arbuscular mycorrhizal fungal richness; AMF_Modularity: arbuscular mycorrhizal fungal network modularity; AMF_Density: arbuscular mycorrhizal fungal network density; EMF_PD; ectomycorrhizal fungal phylogenetic diversity; EMF_rich: ectomycorrhizal fungal richness; EMF_Modularity: ectomycorrhizal fungal network modularity; EMF_Density: ectomycorrhizal fungal network density.
The AMF community exhibited maximum species richness in the SDF, which can be attributed to the extensive colonization of herbaceous plant roots that are abundant in both SDF and adjacent ALM ecosystems of Wuyi Mountains. This pattern aligns with existing literature demonstrating that harsh environmental conditions at higher elevations negatively impact habitat quality (
The heterogeneous environmental gradients across Wuyi Mountain’s altitudinal transect exert substantial influences on the vertical stratification patterns of both AMF and EMF communities. Our findings strongly support the metabolic theory of ecology, demonstrating that climatic variables, particularly MAT, serve as pivotal drivers of mycorrhizal diversity through their regulation of soil fertility parameters and microbial metabolic processes (
Furthermore, while soil pH serves as a crucial regulator of nutrient availability and ion exchange dynamics, our study revealed no direct correlation with mycorrhizal diversity. This absence of correlation may be attributed to the non-limiting nature of phosphorus metabolism for mycorrhizal fungi in Wuyi Mountain’s forest ecosystems, as indicated by the lack of significant relationships between fungal richness and nitrogen- or phosphorus-acquiring enzymatic activities. Notably, we identified a strong positive correlation between mycorrhizal diversity and carbon-cycling enzymatic activity, highlighting the pivotal role of soil enzymes in mediating the transformation of organic matter into bioavailable nutrients that support microbial metabolic processes (
Our findings provide comprehensive insights into the complex dynamics of deterministic and stochastic processes governing AMF and EMF community assembly in Wuyi Mountain’s heterogeneous landscape. While deterministic factors contribute to community structuring, our results corroborate
Network analysis has emerged as a powerful tool for elucidating the intricate interaction patterns within microbial communities (
Ecosystem multifunctionality serves as a critical integrative metric for assessing ecosystem functional potential, with microbial communities playing a central regulatory role (
The contrasting relationships between AMF/EMF diversity and multifunctionality likely stem from fundamental differences in microbial life-history strategies and niche complementarity. These ecological distinctions mediate the functional impacts of each mycorrhizal group, resulting in distinct functional trade-offs (
In summary, our study combines high-throughput sequencing and bioinformatics to map the elevation-driven distribution patterns of mycorrhizal fungal communities in a mid-subtropical mountain ecosystem. By systematically analyzing altitudinal effects on fungal diversity and ecosystem functions, we uncover key ecological mechanisms shaping these communities. However, knowledge gaps remain regarding fungal adaptations across elevation gradients. Future research should prioritize genomic studies to identify genes with significant abundance shifts along altitudinal gradients, offering deeper insights into fungal ecology and microbial adaptation in changing environments.
The authors have declared that no competing interests exist.
No ethical statement was reported.
All the fungal strains used in this study have been legally obtained, respecting the Convention on Biological Diversity (Rio Convention).
This work was supported by the Nature Science Foundation of Fujian province (2021J05023), the National Nature Science Foundation of China (32260027) and the Program for Young Talents of Science and Technology in Universities of Inner Mongolia Autonomous Region (NJYT24051).
Taotao Wei: Writing–original draft; Huiguang Zhang: Investigation; Shunfen Wang: Investigation, Formal analysis; Chunping Wu: Investigation; Tieyao Tu: Writing–review & editing, Investigation, Conceptualization; Yonglong Wang: Investigation, Methodology, Funding acquisition; Xin Qian: Writing–review & editing, Formal analysis, Investigation, Conceptualization, Methodology, Funding acquisition, Project administration.
Chunping Wu https://orcid.org/0009-0000-5888-5444
Data will be made available on request.
Supplementary tables and figures
Data type: docx
Explanation note: table S1: Geographical information of the five forest belts at five altitudes. table S2: Climate information of the five forest belts. table S3: Vegetation indexes of the five forest belts. table S4: PERMANOVA results displaying the effects of elevation on the community composition of the two mycorrhizal fungi. table S5: Effects of environmental factors on vertical community differences of arbuscular mycorrhizal fungi and ectomycorrhizal fungi. table S6: Topological characteristics of mycorrhizal fungal networks and corresponding random networks. figure S1: Species composition of arbuscular mycorrhizal fungi in order level and genus level at five elevations. figure S2: The relationship between mycorrhizal fungal diversity and elevation. figure S3: Effects of environmental factors on arbuscular mycorrhizal fungal and ectomycorrhizal fungial diversity. figure S4: Relative importance of different ecological processes in mycorrhizal fungal community assembly. figure S5: Distribution of the 500 most abundant operational taxonomic units (OTUs) in SPEC-OCCU plots. figure S6: The Venn diagrams display the sharing edges and points of mycorrhizal fungi at 5 elevations.