Short Communication |
Corresponding author: Martin Schnittler ( martin.schnittler@uni-greifswald.de ) Corresponding author: Anna Ronikier ( aa.ronikier@gmail.com ) Academic editor: David Hawksworth
© 2025 Martin Schnittler, Dmytro Leontyev, Iryna Yatsiuk, Anna Ronikier.
This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Citation:
Schnittler M, Leontyev D, Yatsiuk I, Ronikier A (2025) Species descriptions in myxomycetes – can we settle on rules for good taxonomic practice? IMA Fungus 16: e141199. https://doi.org/10.3897/imafungus.16.141199
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Myxomycetes are a unique branch of life, recognisable by sporophores showing a fungus-like dispersal biology. These structures bear nearly all diagnostic characters for species identification and develop by rapid transformation of plasmodia. During this short period of time, external factors can significantly influence the formation of morphological characters. Therefore, the description of a new species must be carried out with utmost care. Over the last 50 years, approximately 10–15 new species of myxomycetes have been described per year and only some of the latest publications underpin this with molecular data. In this paper, we discuss a set of recommendations for the description of myxomycete species new to science, striving for the following goals: (i) to minimise the number of erroneous descriptions of the species, whose names later have to be put into synonymy; (ii) to make all respective data easily accessible for the scientific community; and (iii) to comply with existing rules of nomenclature. We recommend (1) whenever possible not to describe a new taxon from a single specimen; however, an exception could be made only if supported by molecular data and by unique morphological characters which are unlikely to fall in the range of infraspecific variation of related species; (2) preparing detailed descriptions, including data on developmental stages, microhabitats, ecology, phenology and associated species; (3) providing at least two independent diagnostic characters that tell the new species apart from all others; (4) obtaining a molecular barcode and, whenever possible, providing proof for reproductive isolation of the new species from related taxa; and (5) depositing type specimens in public herbaria. To comply with nomenclatural rules, (6) the new name must be registered in a recognised repository, (7) all published names should be checked for usability before proposing a new name and (8) a unique name should be chosen, preferably highlighting a distinct character of the new species.
18S rDNA, delimitation of species, Eumycetozoa, International Code of Nomenclature for algae, fungi, and plants, molecular barcoding, Myxogastria, taxonomy
Recent advances in molecular barcoding methods, as well as in photographic techniques, which now allow the direct acquisition of high-resolution images in the field, have led to a renewed interest in myxomycete taxonomy. This has resulted in a growing number of non-institutional researchers who are discovering new species (e.g.
This fortunate trend also bears two challenges. First, we must find ways to describe new species in a fully comprehensive manner, ensuring that the entire research community can instantly consider these descriptions for further work. Second, we must ensure that both phenotypic plasticity and intraspecific variation will not erroneously cause descriptions of new species. If these two conditions are not fulfilled, premature descriptions arise, creating information noise and causing a burden for future taxonomic research (
What makes myxomycetes special in comparison to many other groups of organisms when it comes to the description of species new to science? Several features can be invoked:
Seemingly eye-catching morphological characters may be misleading: in the type material of Arcyria papilla, the upper part of the sporotheca forms a “nipple-like structure” and this was given as a diagnostic feature of the new species (
Another trait associated with frequent malformation is the capillitium, where granules, nodules, knots or swellings may form, probably from accidentally included material. Lamproderma granulosum (
Due to the significant phenotypic plasticity of diagnostically important structures, one or two specimens of myxomycetes never adequately reflect the range of intraspecific variation. For instance, Alwisia repens was described from two gatherings encountered in the same area. Both specimens displayed a creeping stalk and this character was considered in the description of the species and even predetermined the choice of its epithet (
With all these factors taken into account, the description of new species of myxomycetes may be more challenging than for other groups of terrestrial macro-organisms. In this paper, we: (1) provide some basic data on descriptions of new species of myxomycetes from Linnaeus to the present day and (2) offer a list of good practice recommendations, the implementation of which, in our opinion, will help improve the quality of descriptions of new species and minimise possible errors.
The recommendations written here were discussed within the framework of the 11th International Congress on Systematics and Ecology of Myxomycete (ICSEM11), held in Tartu, Estonia, on 28–31 August 2023 and, in addition to the contributions from the authors, numerous suggestions from the audience were included in this paper.
Data for the description of taxa per year were taken from the Catalogue of Life (https://www.catalogoflife.org/data/, accessed 18.07.2023); in decisions about acceptance of names, this database mainly follows the nomenclatural database (
All names of species cited as examples can be found in the nomenclatural database (
The number of morphologically distinguished and accepted myxomycete species now approaches 1100 and the trend of increasing numbers of new species described per year (
Descriptions of new taxa and new combinations (at species rank) within the class Myxomycetes from 1753 to 2022 according to the Catalogue of Life (release 18.07.2023, https://doi.org/10.48580/dfsy). The database lists 1088 currently accepted taxa and an additional 761 are regarded as heterotypic synonyms. Arrows indicate the publication dates of major monographs (
The following recommendations aim: (i) to minimise the number of erroneous descriptions of the species by a comprehensive description including molecular characters and clear diagnostic features, (ii) to make all these data easily accessible for the scientific community and (iii) to comply with existing rules of nomenclature. Our eight recommendations can be divided into three parts: species delimitation (1–4); registration and preservation of types (5); and nomenclatural issues (6–8). The latter essentially require a species description to be published “effectively” (in a way that the scientific community can access it), “legitimately” (under a unique name) and “validly” (with diagnosis, description and reference to a type). A useful reference is the paper of
1.1. A new species should be known from more than one gathering (see ICN, International Code of Nomenclature for algae, fungi and plants;
1.2. Description of the new species from a single gathering can be considered only as an exception. If a singleton specimen displays at least two striking morphological characters which are likely to be outside the intraspecific variation of the respective characters in related species and its barcode is unique and outside the 99.1% similarity range found empirically to be applicable for molecular species differentiation (
1.3. To facilitate the search for more material, morphological characters of single specimen that may be candidates for a new taxon can be described and illustrated in a specialised journal such as Slime Molds (https://www.slimemolds.org) using a preliminary name in English or Latin which best highlights a prominent character of the putative new species. Preliminary names should be accompanied by the additions nom. prov. (nomen provisorium, provisional name) or ad int. (ad interim, temporarily). Images can also be posted in internet forums, such as the “Slime Mold Identification & Appreciation” group on Facebook (https://www.facebook.com/groups/1510123272580859) to increase attention, which can lead to further observations. Social media are not stable data repositories, but they represent an efficient public platform for the information exchange. When additional material from different locations becomes available, a new species can be formally described in a scientific journal.
2.1. A new taxon should be described as comprehensively as possible (see ICN, Recommendation 39A). This includes all fruiting body structures, but as well plasmodium appearance and developmental stages, if observed. Whenever possible, images in the field should be taken to document the immature stages since the colour of immature sporophores can, in some cases, be quite helpful (as in Tubifera spp. and Lycogala spp., see
2.2. Spore diameter should be measured for at least 30 spores (
2.3. Collect data on geography, ecology, phenology and associations with other organisms. Provide exact geographic references and coordinates for all specimens of the new taxon. Take photos of the micro-habitat of the new species and describe it as exactly as possible (more than just “decaying wood”). Note steady associations with other organisms that can be indicator species for a given taxon. For example, the liverwort Nowellia curvifolia can serve as an indicator species for the minute myxomycete Barbeyella minutissima (
2.4. Make all primary data available and easy to re-use. Publish photographs of all examined specimens and localities, tables with measurements, sequences, alignments, trees etc., as supplementary materials to the paper and/or in public repositories. Try to meet the FAIR principles for data management (
3.1. Give a diagnosis as well as a description of the new species. The diagnosis is “a statement of that which in the opinion of its author distinguishes the taxon from other taxa” (ICN, Art. 38.2). According to
3.2. Try to find traits that tell the new species apart from others and include such descriptive elements in the diagnosis (see ICN, Art. 38). A new taxon should differ in at least two preferably qualitative characters from its most morphologically similar relative. Include in your research: (i) all morphologically most similar described taxa, but as well (ii) taxa with similar molecular barcodes (see below), to provide a convincing list of traits distinguishing the new species from related taxa. Additionally, you can provide an identification key for the genus or the group of species to which the new taxon belongs.
3.3. Special care should be given for differences in quantitative characters. Here, especially broad sampling is needed, including several sporophores from several gatherings. In myxomycetes, differences in spore size of 0.5–1 µm are likely to be within the range of intraspecific variation (as it was shown for species like Physarum andinum,
4.1. At least one genetic marker should be sequenced for the holotype of a new species and only barcoded specimens should be chosen as holotypes. The current standard for molecular barcoding of myxomycetes is the first part of the 18S rDNA gene (nucSSU,
4.2. Check and discuss molecular differences of the new species to the most similar taxa identified by a BLAST search in GenBank (see recommendations by
4.3. A new barcode alone, even if it shows a significant difference from the nearest known barcode, does not make a new species. One species can display several genotypes for a given marker gene (
4.4. If the barcode of a new taxon is identical or extremely close to that of an existing taxon, the position of a putative species should be verified by a second, independently inherited marker. Good candidates include the nuclear single-copy genes EF1A (
4.5. Amoebozoa in general and Myxomycetes in particular are sexual organisms (
4.6. With the current level of knowledge in myxomycete genetics, but as well existing limitations in barcoding technology, at present, we do not recommend for myxomycetes a formal description of cryptic species. While these taxa comply with the biological species concept by being reproductively isolated, no distinguishing morphological traits have been found so far. A well-investigated example concerns three biological species within Trichia varia (
4.7. It is highly recommended to build a phylogeny that includes all available barcodes for the new species, but also the broadest possible sampling of DNA sequences of related taxa retrieved from GenBank. The phylogeny may help to test whether the new taxon: (i) represents a monophyletic group and (ii) does not branch within any other taxon. However, short 18S rDNA barcode sequences might not always be sufficient to prove the monophyly of a new taxon by obtaining a high statistical support for the tree nodes; in this case, it is useful to investigate at least two independent markers.
5.1. Clearly designate type specimens according to the rules of the ICN. Select a holotype and, if possible, isotypes. Deposit type specimens in one or several public herbaria and publish the obtained accession numbers together with your personal collection number. When you plan to deposit isotypes in other herbaria, make sure that the personal collection number has been incorporated into the records of this collection. Since a species name is permanently attached to the type specimen (ICN Art. 7.2, see also Recommendations 7A, 9C, 40A.6), the type specimens remain the first source for all further taxonomic studies (
5.2. Spores taken from the holotype may be stored in plastic tubes separately from the specimens at 4 °C for further molecular studies; data from ferns suggest this treatment to conserve nuclei and thus DNA for future molecular studies (
5.3. Permanent microscope slides can be prepared using a stable mounting medium. We recommend the use of Hoyer’s medium (
6.1. According to nomenclature, myxomycetes are treated as fungi and, thus, fall under the provisions of Chapter F of the ICN (
7.1. If a new species is split off from an existing one, all synonyms must be considered as candidate names for the new taxon. Studies of the respective type specimens may reveal that one or more earlier proposed names (later regarded as synonyms) belong to the new taxon. In this case, the earliest name should be used for the taxon you are planning to describe.
8.1. Avoid choosing an epithet already in use in any related myxomycete species (see ICN, Recommendation 23A.3(h)). Epithets already in use may become homonyms if future investigations place two species from different genera into a single one. In such cases, the semantic link between the new and the old name can be lost. In Mucilago crustacea, molecular data suggested its inclusion in the genus Didymium, but here, the species Didymium crustaceum already exists (
8.2. Avoid choosing a genus name already in use in any other group of organisms, including those that fall under the regulations of the International Code of Zoological Nomenclature (ICZN). Myxomycetes, along with dictyostelids, have always fallen under the provisions of the Botanical Code (ICN, Pre. 8), although other groups of Amoebozoa are governed by the Zoological Code (ICZN).
8.3. Follow the rules and recommendations of ICN (Art. 23, Art. 60) when creating a new epithet. Although the species epithet may be taken from any source (ICN, Art. 23.2), we recommend avoiding non-informative epithets, including personal and geographic names (see ICN, Recommendation 23A.3(j)), unless the name denotes especially high abundance in some regions or proven endemism (such as the genus Tasmaniomyxa which is very likely endemic to the temperate zones around the Tasman Sea,
Together with the Arcellinida (testate amoebae), the myxomycetes are one of the few groups of protists where a morphological species concept is readily applicable. The obvious reason is the sporophore (
Only a decade ago, with two papers outlining the molecular systematics of myxomycetes (
The recommendations in this paper, which specify those of the ICN (
We wish to thank all participants of the ICSEM 11 (28–31.08.2023, Tartu, Estonia) for their contributions to the two discussion rounds about species descriptions in myxomycetes.
The authors have declared that no competing interests exist.
No ethical statement was reported.
We here adhere to the ICN, International Code of Nomenclature for algae, fungi and plants;
This research received support from a project financed by the National Science Centre, Poland (grant no. 2020/39/I/NZ8/03262), from a statutory fund of the W. Szafer Institute of Botany, Polish Academy of Sciences (both to AR), from a grant of the Deutsche Forschungsgemeinschaft (DFG SCHN 1080/6-1) to MS and from the Estonian Research Council (PRG1170) to IY.
A workshop held at ICSEM 11, Tartu, was the starting point for this paper. MS wrote from the protocol of this workshop the initial text and analysed species description data from the Catalogue of Life, assisted by AR. DL and IY critically checked the recommendations and further versions of the text; AR critically checked the respective requirements in ICN.
Martin Schnittler https://orcid.org/0000-0003-0909-5627
Dmytro Leontyev https://orcid.org/0000-0002-4122-1091
Iryna Yatsiuk https://orcid.org/0000-0003-1610-3533
Anna Ronikier https://orcid.org/0000-0003-0193-8685
The dataset analysed during the current study is available in the Catalogue of Life (release 18.07.2023, https://doi.org/10.48580/dfsy).