Research Article |
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Corresponding author: Hiran A. Ariyawansa ( ariyawansa44@ntu.edu.tw ) Academic editor: Pedro Crous
© 2025 Kai-Wen Cheng, Jiue-in Yang, Piroonporn Srimongkol, Marc Stadler, Aphichart Karnchanatat, Hiran A. Ariyawansa.
This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Citation:
Cheng K-W, Yang J-i, Srimongkol P, Stadler M, Karnchanatat A, Ariyawansa HA (2025) Fungal frontiers in toxic terrain: Revealing culturable fungal communities in Serpentine paddy fields of Taiwan. IMA Fungus 16: e155308. https://doi.org/10.3897/imafungus.16.155308
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Serpentine soils are predominantly distributed along the Circum-Pacific margin and the Mediterranean, including eastern Taiwan. These soils are characterized by high levels of heavy metals, including nickel and chromium, and a low calcium-to-magnesium ratio, creating a unique environment that fosters microorganisms with specialized traits. In this study, culture-dependent isolation methods were used to elucidate the composition of culturable fungal communities in serpentine-characterized paddy fields in eastern Taiwan. A total of 154 fungal isolates were isolated from serpentine paddy fields in eastern Taiwan. These isolates were grouped into 79 strains based on colony morphology and were subsequently evaluated through morphological and multi-locus phylogenetic analyses. The results revealed that 60% of the strains belong to the class Dothideomycetes, followed by 21% in Sordariomycetes and 19% in Eurotiomycetes. At the genus level, Westerdykella was the dominant genus, presenting 35% of the total of isolated strains, followed by Pyrenochaetopsis (20%), Talaromyces (19%), and Pseudorhypophila (8%). The study reports 11 novel species: Cylindrotrichum formosanum sp. nov., Dimorphiseta formosana sp. nov., D. serpentinicola sp. nov., Parasarocladium formosum sp. nov., Phialoparvum formosanum sp. nov., Poaceascoma serpentinum sp. nov., Pseudorhypophila formosana sp. nov., Sarocladium formosanum sp. nov., S. serpentinicola sp. nov., Talaromyces taiwanensis sp. nov., and Westerdykella formosana sp. nov. Additionally, 11 known species are reported for the first time in Taiwan: Pseudothielavia terricola, Pseudoxylomyces aquaticus, Pyrenochaetopsis oryzicola, Py. paucisetosa, Setophaeosphaeria microspora, Talaromyces adpressus, T. thailandensis, Westerdykella aquatica, W. capitulum, W. dispersa, and W. globosa. In addition, this study presents the first documented asexual morph within the genus Poaceascoma, represented by P. serpentinum. These discoveries will be valuable for future evaluations of the potential uses and functions of these species as bioremediation agents.
11-new species, heavy metal, phylogeny, serpentine soil, taxonomy
Serpentinite is a metamorphic rock produced by the hydrothermal transformation of ultramafic rocks and contains serpentine minerals (
The toxicity caused by high concentrations of nickel and chromium in serpentinite soils, referred to as the “serpentine syndrome,” results in poor plant productivity and endemism (Fernández et al. 1999;
In Taiwan, serpentinites and serpentine soils are mainly found in Yilan County (Nan’ao), Hualien County (Fonglin, Ruisui, Shoufeng, Wanrung, Yuli), and Taitung County (Beinan, Chishang, Donghe, Guanshan) (
A total of six serpentine soil sampling sites from a previous study (
| Sample name | Location | GPS coordination |
|---|---|---|
| SR1 | Wanrung Township, Hualien County | 23°42'40.3"N, 121°24'48.2"E |
| SR2 | Wanrung Township, Hualien County | 23°42'41.2"N, 121°24'41.8"E |
| SR3 | Guanshan Township, Taitung County | 23°02'18.2"N, 121°11'25.0"E |
| SR4 | Guanshan Township, Taitung County | 23°02'17.6"N, 121°11'26.3"E |
| SR5 | Guanshan Township, Taitung County | 23°02'14.8"N, 121°11'22.6"E |
| SR6 | Guanshan Township, Taitung County | 23°02'12.8"N, 121°11'22.0"E |
Morphological characterization was conducted on PDA and included assessments of colony size, colony color, hyphal growth direction, and pigment diffusion observed in the culture medium. Isolates displaying similar morphological traits, grown on the same medium and collected from the same field, were considered identical; only one representative per group was selected for molecular identification (
Genomic DNA was extracted from the 7- to 10-day-old mycelium using the EasyPure Genomic DNA Spin kit (Bioman Scientific Co., LTD., Taiwan) following the manufacturer’s protocol. PCR amplification was performed in 25 μl reaction mixture containing 12.5 μl of 2X Taq PCR Mix-RED (Bioman Scientific Co., LTD., Taiwan), 9.5 μl of ddH2O, 1 μl of each forward and reverse primer, and 1 μl of fungal DNA template. PCR reactions for amplification of each locus along with their respective primer pairs (See Suppl. material
NCBI BLASTn was initially used to identify the closest matches per each strain, using ITS region to determine the family/genus level classification. Based on the BLASTn results, additional loci were sequenced, as listed in Suppl. material
Using the soil suspension-plating method on ½ PDA, ½ MEA, and 1.5% water agar, a total of 154 fungal isolates were obtained. After morphological characterization, these isolates were grouped into 79 strains. Among the three media, ½ PDA yielded the highest number of strains. All 79 strains identified in this study were classified in Ascomycota, with 60% categorized in Dothideomycetes, 21% in Sordariomycetes, and 19% in Eurotiomycetes (Fig.
The phylogenetic placements and comprehensive descriptions of 33 strains belonging to 11 novel species (Cylindrotrichum formosanum, Dimorphiseta formosana, D. serpentinicola, Parasarocladium formosum, Phialoparvum formosanum, Poaceascoma serpentinum, Pseudorhypophila formosana, Sarocladium formosanum, S. serpentinicola, Talaromyces taiwanensis and Westerdykella formosana), as well as 46 strains belonging to 11 species (Pseudothielavia terricola, Pseudoxylomyces aquaticus, Pyrenochaetopsis oryzicola, Py. paucisetosa, Setophaeosphaeria microspora, Talaromyces adpressus, T. thailandensis, Westerdykella aquatica, W. capitulum, W. dispersa, and W. globosa) that are newly recorded from Taiwan or serpentine environments, are provided below.
Pleosporales Luttrell ex M.E. Barr
Lentitheciaceae Y. Zhang ter, C.L. Schoch, J. Fourn, Crous & K.D. Hyde
The genus Poaceascoma, first introduced by Phookamsak and Hyde (2015) in
TAIWAN • Guanshan Township, Taitung County, 23°02'17.6"N, 121°11'26.3"E, serpentine soil in rice field, 3rd November 2022, K.W. Cheng, holotype,
Named after the serpentine soil from which the species was isolated.
Sexual morph undetermined. Asexual morph Conidiophores submerged in WA, hyaline, flexuous, rarely straight, septate, sometimes branched, 10–25 µm. Conidiogenous cells hyaline to pale brown, holoblastic, monoblastic, terminal, occasionally intercalary, subcylindrical to swollen. Conidia hyaline to pale brown when immature, brown to dark brown when mature, ellipsoidal to broadly ellipsoidal or ovoid, finely verrucose, 3–5 septate, 31.3–48.6 µm × 12–15.7 µm (x̄ = 37.8 × 14 µm, L/W ratio = 2.72, n = 30). Chlamydospores brown to dark brown, dumb-bell-shaped, terminal, straight or sometimes curved, occasionally branched, 108–163 µm in length, 8–15 µm in width.
Colony exhibits slow growth, reaching 35 mm diam with pale gray, fluffy to floccose surface and smooth margins. Reverse side of the colony showed a central brownish color that gradually fades into a lighter beige ring toward the edges.
This study describes Poaceascoma serpentinum as a novel fungal species based on a single strain (
Maximum likelihood (ML) phylogenetic tree based on a concatenated dataset of ITS, LSU, SSU, and tef-1. In total, 32 strains representing 26 taxa were included in the concatenated dataset, with 3357 characters (ITS 606 bp, LSU 840 bp, SSU 1021 bp, and tef-1 890 bp) including alignment gaps. The tree was rooted with Multiseptospora thailandica MFLUCC 11-0183. MLB ≥ 70% and BPPs ≥ 0.95 were shown at each node; values lower than these thresholds are indicated by a hyphen (–). The scale bar indicates the number of estimated substitutions per site. The strains introduced in this study are in red and novel species are in bold. The ex-type strains are marked with T.
The genus Pseudoxylomyces was introduced by Tanaka and Hiray (2015) as a saprobic genus in habitat on submerged wood and typified with Ps. elegans (
Sexual morph undetermined. Asexual morph Conidia produced on carnation leaves and on the surface or submerged in WA. Conidiophores short (7–13.5 µm) or absent. Conidiogenous cells holoblastic. Conidia solitary, orange-brown when immature, turn brown in mature, occasionally with paler end cells in pale brown, broadly fusiform, most 5 thick and obvious septa (few 3–4 septa), rough, thick-walled, 37.6–50 µm × 11.8–17 µm (x̄ = 44 × 14.5 µm, L/W ratio = 3.05, n = 20).
Colony reaching 30 mm diam with dark grayish-brown in the center, pale brown to gray in margin, velvety, rough surface, entire edge, and similar to reverse side of the colony.
TAIWAN • Wanrung Township, Hualien County, 23°42'40.3"N, 121°24'48.2"E, serpentine soil in rice field, 2nd November 2022, K.W. Cheng, living culture
Pseudoxylomyces aquaticus was previously documented on submerged wood in Thailand. Our study recovered a single strain (
Maximum likelihood (ML) phylogenetic tree based on a concatenated dataset of ITS, LSU, SSU, and tef-1. In total, 12 strains representing seven taxa were included in the concatenated dataset, with 2920 characters (ITS 526 bp, LSU 845 bp, SSU 643 bp, and tef-1 906 bp) including alignment gaps. The tree was rooted with Corynespora cassiicola CBS 100822. MLB ≥ 70% and BPPs ≥ 0.95 were shown at each node; values lower than these thresholds are indicated by a hyphen (–). The scale bar indicates the number of estimated substitutions per site. The strains introduced in this study are in red and novel species are in bold. The ex-type strains are marked with T.
The genus Pyrenochaetopsis was introduced by
Sexual morph undetermined. Asexual morph Conidiomata 128–219 µm, pycnidial, globose to subglobose, dark brown, ostiolate, with dark brown, septate setae, superficial on WA and carnation leaves. Pycnidial wall textura angularis, septate setae, brown, pseudoparenchymatous cells. Conidiogenous cells hyaline, phialidic, smooth-walled, 3.6–5.0 µm × 2.9–4.1 µm (x̄ = 4.1 × 3.5 µm, n = 30). Conidia hyaline, cylindrical to ellipsoidal, aseptate, with 2 small guttules, 3.7–4.7 µm × 1.5–2.1 µm (x̄ = 4.2 × 1.8 µm, L/W ratio = 2.4, n = 30).
Colony exhibit slow growth, reaching 28 mm diam with pale gray, floccose surface, smooth margins, and medium-gray on the reverse side of the colony.
TAIWAN • Wanrung Township, Hualien County, 23°42'41.2"N, 121°24'41.8"E, serpentine soil in rice field, 2nd November 2022, K.W Cheng, living culture
In the present study, strain
Maximum likelihood (ML) phylogenetic tree based on a concatenated dataset of ITS, LSU, rpb2, and tub2. In total, 52 strains representing 29 taxa were included in the concatenated dataset, with 2453 characters (ITS 451 bp, LSU 845 bp, rpb2 815 bp, and tub2 342 bp) including alignment gaps. The tree was rooted with Neopyrenochaetopsis hominis CBS 143033. MLB ≥ 70% and BPPs ≥ 0.95 were shown at each node; values lower than these thresholds are indicated by a hyphen (–). The scale bar indicates the number of estimated substitutions per site. The strains introduced in this study are in red and novel species are in bold. The ex-type strains are marked with T.
Sexual morph undetermined. Asexual morph Sporulation difficult on PDA and MEA, conidiomata produced on carnation leaves and on the surface or submerged in WA. Conidiomata 140–196 µm, pycnidial, brown, globose to subglobose, ostiolate, superficial on WA and carnation leaves, with dark brown, septate setae. Pycnidial wall textura angularis to globulosa, brown, pseudoparenchymatous cells. Conidiogenous cells hyaline, phialidic, smooth-walled, and hard to distinguish from the pycnidial wall 3.3–5.6 µm × 3.0–4.6 µm (x̄ = 4.4 × 3.5 µm, n = 30). Conidia hyaline, cylindrical to ellipsoidal, aseptate, with 2 small but obvious guttules, 3.6–5.1 µm × 1.7–2.5 µm (x̄ = 4.3 × 2.2 µm, L/W ratio = 2.03, n = 50).
Colony reaching 45 mm diam with greenish-gray, flat, velvety to floccose surface and smooth margins, and similar to reverse side of the colony.
TAIWAN • Wanrung Township, Hualien County, 23°42'40.3"N, 121°24'48.2"E, serpentine soil in rice field, 2nd November 2022, K.W Cheng, living culture
Pyrenochaetopsis oryzicola was originally reported from dead panicles of Oryza sativa in paddy fields in Thailand (
Crous and Zhang (2014) introduced the genus Setophaeosphaeria to accommodate Se. hemerocallidis isolated from leaf of Hemerocallis fulva (
Sexual morph undetermined. Asexual morph Conidiomata 170–240 µm, pycnidial, brown, globose, ostiolate, submerged or superficial on PDA. Setae brown, straight to slightly curved, thick-walled, smooth, septate, up to 160–250 µm long, 3.5–4.0 µm wide at broadest part. Pycnidial wall textura angularis to globulosa, brown to dark brown, multi-layers. Conidiogenous cells hyaline, subglobose, smooth-walled, 3.3–4.5 µm × 2.3–3.5 µm (x̄ = 3.9 × 2.9 µm, n = 15). Conidia hyaline, cylindrical, obtuse ends, aseptate, with 2 small but obvious guttules, 3.2–4.0 µm × 1.3–1.7 µm (x̄ = 3.7 × 1.4 µm, L/W ratio = 2.54, n = 30).
Colony reaching 35 mm diam with dark grayish-green in center, beige in margin, velvety, entire edge, and similar to reverse side of the colony.
TAIWAN • Guanshan Township, Taitung County, 23°02'12.8"N, 121°11'22.0"E, serpentine soil in rice field, 2nd November 2022, K.W Cheng, living culture
The strains named
Maximum likelihood (ML) phylogenetic tree based on a concatenated dataset of ITS, LSU, and tub2. In total, 14 strains representing 11 taxa were included in the concatenated dataset, with 1534 characters (ITS 482 bp, LSU 773 bp, and tub2 279 bp) including alignment gaps. The tree was rooted with Pyrenochaetopsis americana UTHSC DI16-225. MLB ≥ 70% and BPPs ≥ 0.95 were shown at each node; values lower than these thresholds are indicated by a hyphen (–). The scale bar indicates the number of estimated substitutions per site. The strains introduced in this study are in red and novel species are in bold. The ex-type strains are marked with T.
Sexual morph Cleistothecia superficial or submerged on central region of PDA, 150–291 µm diam, globose to subglobose, glabrous, dirty gray when immature, black when mature. Peridium single-layered, brown, translucent, membranous, angular cells. Asci subglobose to ovoid, hyaline when immature, brown when mature, 32-spored, 12.2–16.3 µm × 10.7–14.7 µm (x̄ = 14.3 × 12.6 µm, L/W ratio = 1.15, n = 30). Ascospores ellipsoidal, smooth, subhyaline to light brown, 1 to 2 guttules, no germ-slits, 4.7–5.9 µm × 2.2–3.3 µm (x̄ = 5.1 × 2.8 µm, L/W ratio = 1.87, n = 50). Asexual morph undetermined.
Colony exhibits rapid growth, reaching 90 mm daim with a slightly diffused edge, flat and fluffy, predominantly creamy white, with a central region transitioning to pale yellow, reverse yellow to dark yellow in the central region due to the presence of cleistothecia.
TAIWAN • Guanshan Township, Taitung County, 23°02'17.6"N, 121°11'26.3"E, serpentine soil in rice field, 3rd November 2022, K.W. Cheng, living culture
Westerdykella aquatica has been reported from rice field mud and stems of Acorus calamus in China (
Maximum likelihood (ML) phylogenetic tree based on a concatenated dataset of ITS, LSU, and tub2. In total, 56 strains representing 17 taxa were included in the concatenated dataset, with 2314 characters (ITS 459 bp, LSU 865 bp, and tub2 990 bp) including alignment gaps. The tree was rooted with Preussia funiculata Huhndorf 2577 and P. typharum CBS 107.69. MLB ≥ 70% and BPPs ≥ 0.95 were shown at each node; values lower than these thresholds are indicated by a hyphen (–). The scale bar indicates the number of estimated substitutions per site. The strains introduced in this study are in red and novel species are in bold. The ex-type strains are marked with T.
Sexual morph undetermined. Asexual morph Conidiomata 95–198 µm, globose, subglobose to irregular due to fusion of two or more, glabrous, dark brown, ostiolate, mostly superficial, some submerged in PDA. Conidia borne terminally in camel brown gelatinous mass, ellipsoidal, some globose, smooth, hyaline, 1 to 2 guttules, 3.0–4.1 µm × 2.4–3.4 µm (x̄ = 3.5 × 2.8 µm, L/W ratio = 1.3, n = 50.
Colony exhibit rapid growth, reaching 90 mm daim with a uniform surface and smooth margins, forming a concentric pattern. The central region appears light grayish-brown due to dense conidiomata, while the edges exhibit a translucent beige hue.
TAIWAN • Wanrung Township, Hualien County, 23°42'40.3"N, 121°24'48.2"E, serpentine soil in rice field, 2nd November 2022, K.W. Cheng, living culture
Westerdykella capitulum has been reported from various environments, including saline soil in India (
Sexual morph Cleistothecia 187–296 µm diam, globose to subglobose, glabrous, dark brown to black when mature, superficial or submerged in PDA. Peridium single-layered, light brown, translucent, membranous, angular cells. Asci subglobose to ovoid, hyaline when immature, brown when mature, 32-spored, 11.0–13.6 µm × 9.7–11.8 µm (x̄ = 12.3 × 10.8 µm, L/W ratio = 1.14, n = 30). Ascospores ellipsoidal, smooth, subhyaline to light brown, 2 guttules, no germ-slits, 1.8–2.7 µm × 3.7–4.5 µm (x̄ = 2.3 × 4.0 µm, L/W ratio = 1.82, n = 50). Asexual morph Conidiomata abundant on PDA at 25 °C, 7 days post-inoculation, 44–88 µm, globose, subglobose to irregular due to fusion of two or more, glabrous, brown, ostiolate, superficial. Conidia borne terminally in camel brown gelatinous mass, ellipsoidal, subglobose, some pyriform, smooth, hyaline, 0 to 2 guttules, 1.8–2.7 µm × 3.1–4.0 µm (x̄ = 2.1 × 3.3 µm, L/W ratio = 1.62, n = 50).
Colony exhibit rapid growth, reaching 80 mm daim with slightly diffuse and beige margins, yellow to pale orange pigmentation radiating outward in a concentric ring pattern, texture velvety to slightly cottony. The cleistothecia and abundant conidiomata caused the center to appear black or dark yellow.
TAIWAN • Guanshan Township, Taitung County, 23°02'12.8"N, 121°11'22.6"E, serpentine soil in rice field, 3rd November 2022, K.W. Cheng, living culture
Westerdykella dispersa have a global distribution and have been isolated from diverse substrates, including soil from the Netherlands and Nigeria (
Morphology of Westerdykella dispersa
TAIWAN • Wanrung Township, Hualien County, 23°42'40.3"N, 121°24'48.2"E, serpentine soil in rice field, 2nd November 2022, K.W Cheng, holotype,
Named after Formosa, the former name of Taiwan, where the type specimen was collected.
Sexual morph Cleistothecia 250–430 µm diam, non-ostiolate, globose, glabrous, mostly superficial, some submerged in PDA, dirty gray when immature, black when mature. Peridium single-layered, brown, translucent, membranous, angular cells. Asci subglobose to globose, hyaline when immature, 32-spored, 15.7–21.0 µm × 14.6–18.4 µm (x̄ = 18.3 × 16.3 µm, L/W ratio = 1.1, n = 30). Ascospores ellipsoidal, smooth, subhyaline to light brown, 1 to 3 guttules, no germ-slits, 3.4–6.4 µm × 1.8–3.2 µm (x̄ = 5.2 × 2.6 µm, L/W ratio = 2.01, n = 50). Asexual morph undetermined.
Colony exhibits rapid growth, reaching 80 mm diam with flat, sparse aerial mycelium, creamy white, surface and margins smooth, pale gray in central region due to the presence of cleistothecia.
Westerdykella formosana forms a distinct clade in our phylogenetic analysis (Fig.
Sexual morph Cleistothecia clustered in submerged regions in PDA, 106–185 µm diam, globose to subglobose, dirty gray when immature, dark brown to black when mature. Asci subglobose to ovoid, hyaline when immature, greenish brown when mature, 32-spored, edges slightly irregular due to crowding of mature ascospores, 26.9–40.2 µm × 20.8–29.8 µm (x̄ = 32.7 × 24.5 µm, L/W ratio = 1.35, n = 30). Ascospores mostly globose, some subglobose, smooth, yellowish-brown, 1 to 2 guttules, 5.2–6.8 µm × 5.4–6.9 µm (x̄ = 6.1 × 5.9 µm, L/W ratio = 1.03, n = 50). Asexual morph undetermined.
Colony reaching 50 mm diam with slightly diffused edge, predominantly creamy white and partly fluffy, with only the cleistothecia cluster region turning dark brown.
TAIWAN • Guanshan Township, Taitung County, 23°02'14.8"N, 121°11'22.6"E, serpentine soil in rice field, 3rd November 2022, K.W. Cheng, living culture
Preussia globosa was synonymized under Westerdykella globosa by Ito (1995). This species has been reported from various environments, including soil from a stream bank and stored wheat grains in India (
Eurotiales G.W. Martin ex Benny & Kimbrough
Trichocomaceae E. Fischer
The genus Talaromyces was first established by
Sexual morph undetermined. Asexual morph Conidiophores arose from aerial hyphae, or roping hyphal aggregations, hyaline, straight, bi-verticillate. Metulae 9.6–15.5 µm × 2.4–3.0 µm. Phialides 3–5, flask-shaped, 8.5–10.8 µm × 2.1–2.6 µm. Conidia globose to subglobose, hyaline, few pale green, 2.2–2.5 µm × 1.6–2.1 µm (x̄ = 2.3 × 1.9 µm, L/W ratio = 1.20, n = 25).
• CYA 23–25/33–38; CYAS No growth; MEA 55–58/80–85; OA 43–46/85–90; PDA 38–42/60–65; YESA 43–45/62–65.
• CYA/MEA 20 °C 28–30/30–33; 30 °C 30–33/51–56; 37 °C 16–18/16–19.
CYA, 25 °C, 14 days, sulcate, margin entire and white to buff, floccose, sporulation sparse, pale gray to grayish-green, soluble pigments absent, exudates clear droplets; reverse in coffee brown to caramel. MEA, 25 °C, 14 days, margin slightly irregular and beige, floccose to funiculose, sporulation dense, grayish-green, soluble pigments absent, exudates clear droplets; reverse in light yellowish brown. OA, 25 °C, 14 days, margin entire and pale gray, floccose to funiculose, sporulation dense, dark green, soluble pigments absent, exudates clear droplets; reverse in buff. PDA, 25 °C, 14 days, margin irregular and whitish, floccose to funiculose, sporulation dense, olive green, soluble pigments absent, exudates clear droplets; reverse in cream-buff. YESA, 25 °C, 14 days, margin slightly irregular, floccose, sporulation moderately dense, warm beige, soluble pigments and exudates absent; reverse in light gold to metallic gold.
TAIWAN • Guanshan Township, Taitung County, 23°02'12.8"N, 121°11'22.0"E, serpentine soil in rice field, 2nd November 2022, K.W Cheng, living culture
In the present study, our strain (
Morphology of Talaromyces adpressus
Maximum likelihood (ML) phylogenetic tree based on a concatenated dataset of ITS, cmdA, rpb2, and tub2. Species representing section Talaromyces including 113 strains representing 98 taxa were included in the concatenated dataset, with 2127 characters (ITS 536 bp, cmdA 336 bp, rpb2 843 bp, and tub2 412 bp) including alignment gaps. The tree was rooted with Talaromyces helicus CBS 335.48 (Section Helici). MLB ≥ 70% and BPPs ≥ 0.95 were shown at each node; values lower than these thresholds are indicated by a hyphen (–). The scale bar indicates the number of estimated substitutions per site. The strains introduced in this study are in red and novel species are in bold. The ex-type strains are marked with T.
TAIWAN • Wanrung Township, Hualien County, 23°42'40.3"N, 121°24'48.2"E, serpentine soil in rice field, 2nd November 2022, K.W Cheng, holotype,
Named after Taiwan, the country where the type specimen was collected.
Sexual morph undetermined. Asexual morph Conidiophores arose from aerial hyphae, or roping hyphal aggregations, hyaline, smooth but some slightly rough, straight, most mono-verticillate or bi-verticillate, occasionally formed subterminal side branches of mono-verticillate, 5–130 µm. Metulae 10.5–16.5 µm × 2.8–3.2 µm. Phialides most 3–5, flask-shaped, 8.2–15.6 µm × 2.0–2.8 µm, rarely mono-phialides up to 18.2 µm × 3.5 µm. Conidia globose to subglobose, few pyriform, rough surfaces and walls, hyaline in immature, pale green to green in mature, 3.3–4.6 µm × 2.9–4.0 µm (x̄ = 3.8 × 3.5 µm, L/W ratio = 1.1, n = 50).
• CYA 13–15/30–33; CYAS No growth; MEA 58–60/80–85; OA 48–50/88–90; PDA 52–57/72–75; YESA 37–40/65–72.
• CYA/MEA 20 °C 30–32/38–40; 30 °C 19–21/55–58; 37 °C 15–16/25–28.
CYA, 25 °C, 14 days, obvious sulcate, margin entire, floccose, sporulation none, pale gray to beige at center, soluble pigments absent, exudates clear small droplets; reverse in yellowish brown and caramel at center. MEA, 25 °C, 14 days, margin slightly irregular and beige, floccose to funiculose, sporulation dense, grayish-green, soluble pigments absent, exudates clear droplets; reverse in cream-buff. OA, 25 °C, 14 days, margin entire and beige, floccose to funiculose, sporulation dense, olive green, soluble pigments absent, exudates clear small droplets; reverse in buff. PDA, 25 °C, 14 days, margin entire and whitish, floccose to funiculose, sporulation dense, green, soluble pigments absent, exudates clear droplets; reverse in cream-buff. YESA, 25 °C, 14 days, margin slightly irregular, floccose, sporulation moderately dense, warm beige, soluble pigments absent, exudates clear small droplets; reverse in warm beige to copper brown.
Talaromyces taiwanensis forms a strongly supported clade (100%/0.99) with its sister species T. californicus and T. louisianensis in the multi-locus phylogeny (Fig.
Morphology of Talaromyces taiwanensis
Sexual morph Ascomata solitary or clustered, superficial, globose to subglobose, yellow hyphae covered, 220–470 µm diam. Asci subglobose to ovoid, hyaline, 8.6–12.7 µm × 7.9–10.1 µm (x̄ = 10.9 × 9.6 µm, L/W ratio = 1.14, n = 15). Ascospores ellipsoidal, spiny, thick walled, 4.2–5.0 µm × 2.8–3.5 µm (x̄ = 4.6 × 3.2 µm, L/W ratio = 1.47, n = 25). Asexual morph Conidiophores straight, bi-verticillate, smooth walled and long stipes, up to 300 µm. Metulae 9.1–14.0 µm × 2.5–2.8 µm. Phialides 3–6, flask-shaped, 8.1–12.5 µm × 2.2–2.5 µm. Conidia globose to subglobose, smooth walled, hyaline to pale brownish green, 2.0–2.8 µm × 1.6–2.4 µm (x̄ = 2.4 × 2.0 µm, L/W ratio = 1.20, n = 25).
• CYA 35–38/58–61; CYAS 15–17/31–33; MEA 40–42/70–75; OA 39–42/85–90; PDA 38–41/70–75; YESA 30–33/43–48.
• CYA/MEA 20 °C 32–34/31–33; 30 °C 40–44/37–42; 37 °C No growth/No growth.
CYA, 25 °C, 14 days, margin entire and light yellow, floccose, sporulation dense, yellowish orange, soluble pigments absent, exudates clear droplets; reverse in orange and copper brown at center. MEA, 25 °C, 14 days, margin entire and whitish, floccose, sporulation dense, grayish-green, soluble pigments absent, exudates clear droplets; reverse in cream-buff. OA, 25 °C, 14 days, margin entire and golden yellow, floccose to funiculose, sporulation dense, orange to grayish-green and wine red at center, soluble pigments absent, exudates clear droplets; reverse in buff. PDA, 25 °C, 14 days, margin entire and light yellow, floccose, sporulation dense, yellowish orange to grayish-green, soluble pigments absent, exudates clear droplets; reverse in cream-buff. YESA, 25 °C, 14 days, slightly sulcate, margin irregular, floccose, sporulation moderately dense, yellowish orange, soluble pigments and exudates absent; reverse in orange-brown.
TAIWAN • Guanshan Township, Taitung County, 23°02'17.6"N, 121°11'26.3"E, serpentine soil in rice field, 3rd November 2022, K.W. Cheng, living culture
In the present study, our strain (
Morphology of Talaromyces thailandensis
Glomerellales Chadef. ex Réblová, W. Gams & K.A. Seifert
Reticulascaceae Réblová & W. Gams
Cylindrotrichum oligospermum was originally used by (Corda) Bonord. to establish the genus Cylindrotrichum, while Reticulascus was introduced as a new genus with Reticulascus clavatus as the type species, and Cylindrotrichum clavatum as its asexual morph. Later, C. oligospermum, including C. hennebertii, was recombined and treated as a synonym of R. tulasneorum (
TAIWAN • Guanshan Township, Taitung County, 23°02'12.8"N, 121°11'22.0"E, serpentine soil in rice field, 2nd November 2022, K.W Cheng, holotype,
Named after Formosa, the former name of Taiwan, where the type specimen was collected.
Sexual morph undetermined. Asexual morph Conidia produced on carnation leaves and WA. Conidiophores solitary, subcylindrical, light brown, unbranched, straight to slightly flexuous, and thick-walled. Conidiogenous cells subcylindrical, light brown to light gray, terminal or intercalary, with flared collarettes. Conidia solitary or aggregated in clusters, subcylindrical to slightly curved, with an obtuse apex, guttules, hyaline, smooth-walled, and 0 to 3-septate, 13.4–19.9 µm × 3.8–6.1 µm (x̄ = 16.3 × 4.6 µm, L/W ratio = 3.6, n = 50). Chlamydospores rusty copper-brown, circular to slightly ellipsoidal, clustered 1–3 on PDA and WA. Single chlamydospores 6.1–8.9 µm × 5.9–8.4 µm (x̄ = 7.3 × 7.2 µm, L/W ratio = 1.0, n = 50).
Colony reaching 60 mm diam with flat, spreading, gray margin and dark gray blue in the center, reverse similar.
Cylindrotrichum formosanum
Maximum likelihood (ML) phylogenetic tree based on a concatenated dataset of ITS, LSU, and SSU. In total, 16 strains representing 13 taxa were included in the concatenated dataset, with 2055 characters (ITS 475 bp, LSU 848 bp, and SSU 732 bp) including alignment gaps. The tree was rooted with Colletotrichum musae CBS 116870. MLB ≥ 70% and BPPs ≥ 0.95 were shown at each node; values lower than these thresholds are indicated by a hyphen (–). The scale bar indicates the number of estimated substitutions per site. The strains introduced in this study are in red and novel species are in bold. The ex-type strains are marked with T.
Sarocladiaceae L. Lombard
The genus Parasarocladium was first introduced by
TAIWAN • Guanshan Township, Taitung County,23°02'17.6"N, 121°11'26.3"E, serpentine soil in rice field, 3rd November 2022, K.W. Cheng, holotype,
Named after Formosa, the former name of Taiwan, where the type specimen was collected.
Sexual morph undetermined. Asexual morph Conidia were observed on WA. Conidiophores mostly solitary, phialidic, straight but some curved, smooth, hyaline, arising directly from aerial or substratal hyphe, unbranched, mono-phialides or adelophialides predominant, 7–18 × 2–3 μm. Conidia ellipsoidal, sometimes fusoid, hyaline, aseptate, smooth-walled, 1-celled, several tiny guttules, arranged in slimy heads, 3.7–7.4 µm × 2.0–3.9 µm (x̄ = 4.9 × 2.6 µm, L/W ratio = 1.94, n = 50).
Colony exhibits slow growth, reaching 35 mm diam with creamy white, radially folded, slightly rugose at center region, smooth margin, reverse pale yellow.
Parasarocladium formosum forms a distinct clade with strong support (94%/1.00), as a sister taxon to Pa. chondroidum in our multi-locus phylogenetic analysis (Fig.
Maximum likelihood (ML) phylogenetic tree based on a concatenated dataset of ITS, LSU, and tef-1. In total, 19 strains representing 17 taxa were included in the concatenated dataset, with 2159 characters (ITS 505 bp, LSU 809 bp, and tef-1 845 bp) including alignment gaps. The tree was rooted with Sarocladium ochraceum CBS 428.67. MLB ≥ 70% and BPPs ≥ 0.95 were shown at each node; values lower than these thresholds are indicated by a hyphen (–). The scale bar indicates the number of estimated substitutions per site. The strains introduced in this study are in red and novel species are in bold. The ex-type strains are marked with T.
The genus Sarocladium was introduced by Gams and Hawksworth (1975) to accommodate two rice (Oryza sativa) pathogens, S. oryzae and S. attenuatum, with the former as type species. Currently, 38 species epithets are recognized for Sarocladium in Mycobank (Accession date: March 10, 2025). Conidiophores of Sarocladium are mononematous, hyaline, arising from aerial mycelium, submerged hyphae or hyphal ropes. They are straight or slightly curved, mono-, poly- or adelophialidic with smooth-walls. Conidia are hyaline to subhyaline, smooth-walled, and highly variable in shape—ranging from cylindrical, bacilliform, oblong, ovoid, fusoid, and limoniform to subglobose or irregular. They are typically produced in slimy heads or dry chains. Additionally, recent studies have reported the occasional presence of crystals and chlamydospores in some species (
TAIWAN • Guanshan Township, Taitung County, 23°02'17.6"N, 121°11'26.3"E, serpentine soil in rice field, 3rd November 2022, K.W. Cheng, holotype,
Named after Formosa, the former name of Taiwan, where the type specimen was collected.
Sexual morph undetermined. Asexual morph Conidia were observed on WA. Conidiophores solitary, hyaline, straight to slightly flexuous, smooth-walled, arising from hyphal ropes or vegetative hyphae. Phialides subulate, hyaline, wide at the base, with, 13–30 µm long. Adelophialides and schizophialides not observed. Conidia unicellular, cylindrical with rounded ends, hyaline, smooth-walled, 1-celled, few with inconspicuous 1 to 2 guttules on the end(s), sometimes aggregated in clusters forming a slimy head, 3.5–5.3 µm × 1.1–2.1 µm (x̄ = 4.4 × 1.5 µm, L/W ratio = 3.08, n = 50).
Colony exhibit slow growth, reaching 35 mm diam with flat, pale orange, wrinkled in the center, slimy, and smooth margin. The reverse side of the colony displayed similar characteristics.
In the present study, Sarocladium formosanum forms a distinct clade with strong support (99%/1.00) based on multi-locus phylogenetic analysis (Fig.
Maximum likelihood (ML) phylogenetic tree based on a concatenated dataset of ITS, LSU, rpb2, and tef-1. In total, 45 strains representing 38 taxa were included in the concatenated dataset, with 2821 characters (ITS 497 bp, LSU 779 bp, rpb2 734 bp, and tef-1 811 bp) including alignment gaps. The tree was rooted with Parasarocladium breve CBS 150.62. MLB ≥ 70% and BPPs ≥ 0.95 were shown at each node; values lower than these thresholds are indicated by a hyphen (–). The scale bar indicates the number of estimated substitutions per site. The strains introduced in this study are in red and novel species are in bold. The ex-type strains are marked with T.
TAIWAN • Guanshan Township, Taitung County, 23°02'14.8"N, 121°11'22.6"E, serpentine soil in rice field, 3rd November 2022, K.W. Cheng, holotype,
Named after the serpentine soil from which the species was isolated.
Sexual morph undetermined. Asexual morph Conidia were observed on WA. Conidiophores solitary, hyaline, straight to slightly flexuous, smooth-walled, arising from hyphal ropes or vegetative hyphae. Phialides subulate, hyaline, wide at the base, with, 23–32 µm long. Schizophialides not observed. Conidia unicellular, cylindrical with rounded ends, hyaline, smooth-walled, 1-celled, few with inconspicuous 1 to 2 guttules on the end(s), sometimes aggregated in clusters forming a slimy head, 3.2–5.5 µm × 1.2–1.8 µm (x̄ = 4.3 × 1.5 µm, L/W ratio = 2.92, n = 30). Adelophialides observed, 3.6–8.8 µm long and sporulated obvious guttules and larger conidia, 3.8–7.0 µm × 1.6–2.5 µm (x̄ = 5.3 × 2.0 µm, L/W ratio = 2.73, n = 30).
Colony exhibit slow growth, reaching 30 mm diam with flat, pale orange, slightly wrinkled in the center, slimy, and smooth margin. The reverse side of the colony displayed similar characteristics.
Sarocladium serpentinicola introduced in this study forms a distinct clade with moderately support (82%/0.91) based on multi-locus phylogenetic analysis (Fig.
The genus Dimorphiseta was introduced to place D. terrestris, a strain originally isolated from soil habit in USA by Lombard and Crous (2016), and three species are recognized in MycoBank (Accession date: March 10, 2025). Conidiomata of these species are superficial, oval to elongate or irregular in outline, sporodochial, stromatic, cupulate, scattered or gregarious, and are covered by an olivaceous green mucoid layer. Three distinct types of setae are present: type I – hyaline, thin-walled, flexuous to circinate, verrucose, tapering to an obtuse apice; type II – hyaline, thick-walled, septate, smooth, tapering to a sharp apice; type III – hyaline, thin-walled, straight, terminating in an obtuse apex. Conidiophores are irregular, macronematous and smooth-walled. Conidiogenous cells are hyaline, cylindrical, phialidic, smooth, with conspicuous collarettes while conidia are hyaline, cylindrical, fusiform, smooth, aseptate, funnel-shaped mucoid apical appendage (
TAIWAN • Wanrung Township, Hualien County, 23°42'40.3"N, 121°24'48.2"E, serpentine soil in rice field, 2nd November 2022, K.W Cheng, holotype,
Named after Formosa, the former name of Taiwan, where the type specimen was collected.
Sexual morph undetermined. Asexual morph No sporulation on PDA and MEA, conidiomata produced very few on carnation leaves and surface of WA. Conidiomata 260–460 µm diam, randomly scattered, superficial, sporodochial, stromatic, subglobose to irregular in outline, dark green to black, agglutinated slimy mass of conidia. Setae thick-walled, hyaline, smooth, septate, straight to slightly curved, tapering to sharp apices, 170–240 µm long, 4–6 µm wide at broadest part. Conidiophores unbranched, hyaline to green, smooth to lightly verrucose, arising from basal stroma. Conidiogenous cells phialidic, hyaline, cylindrical, smooth, with collarette at tip, 17.2–22.7 µm × 1.7–2.3 µm (x̄ = 20 × 1.9 µm, n = 25). Conidia aseptate, hyaline, fusiform, smooth, few with funnel-shaped apical appendage, 7.8–9.0 µm × 2.1–3 µm (x̄ = 8.4 × 2.6 µm, L/W ratio = 3.32, n = 50).
Colony reaching 60 mm diam with white, fluffy, cotton-like mycelium in center that gradually thinned toward the edges with a slightly irregular margin. A slight yellowish-green pigment diffused in PDA and the reverse side of the medium appeared canary yellow.
This study introduces Dimorphiseta formosana as a new species, described from a single strain obtained from serpentine soil. D. formosana forms a distinct clade with moderately high statistical support (68%/0.98) based on multi-locus phylogenetic analysis (Fig.
Maximum likelihood (ML) phylogenetic tree based on a concatenated dataset of ITS, cmdA, rpb2, and tub2. In total, 22 strains representing 19 taxa were included in the concatenated dataset, with 2424 characters (ITS 569 bp, cmdA 709 bp, rpb2 721 bp, and tub2 425 bp) including alignment gaps. The tree was rooted with Inaequalispora prestonii CBS 175.73. MLB ≥ 70% and BPPs ≥ 0.95 were shown at each node; values lower than these thresholds are indicated by a hyphen (–). The scale bar indicates the number of estimated substitutions per site. The strains introduced in this study are in red and novel species are in bold. The ex-type strains are marked with T.
TAIWAN • Wanrung Township, Hualien County, 23°42'40.3"N, 121°24'48.2"E, serpentine soil in rice field, 2nd November 2022, K.W Cheng, holotype,
Named for the serpentine soil from which the species was isolated.
Sexual morph undetermined. Asexual morph No sporulation on PDA and MEA, conidiomata produced on carnation leaves. Conidiomata 258–548 µm diam, 70–225 µm deep, randomly scattered, superficial, sporodochial, stromatic, globose to subglobose, smooth outline, dark green to black, agglutinated slimy, mucoid mass of conidia. Setae thick-walled, hyaline, smooth, septate, straight to slightly curved, tapering to sharp apices, 180–280 µm long, 5–7 µm wide at broadest part. Conidiophores unbranched, hyaline to green, smooth to lightly verrucose, arising from basal stroma. Conidiogenous cells phialidic, hyaline, cylindrical, smooth, with collarette at tip, 18.3–23.5 µm × 1.6–2.2 µm (x̄ = 21.0 × 1.9 µm, n = 25). Conidia aseptate, hyaline, fusiform, smooth, funnel-shaped apical appendage, 7.4–8.7 µm × 2.2–3.1 µm (x̄ = 8.1 × 2.7 µm, L/W ratio = 3.07, n = 50).
Colony reaching 38 mm diam with abundant white, cotton-like mycelium and slightly irregular margin. A mustard pigment developed, and the reverse side of the medium appeared pale yellow.
The new taxon D. serpentinicola proposed in the present study forms a distinct clade with strong statistical support (97/1.00) based on multi-locus phylogenetic analysis (Fig.
Chaetomiaceae G. Winter
The genus Pseudothielavia was initially proposed by Wang and Houbraken (2019), to place Coniothyrium terricola, which is initially isolated from soil habitat. In recent years several species were introduced in this genus and currently four species epithets are listed in MycoBank (Accession date: March 10, 2025) for Pseudothielavia. Ascomata of these species are solitary to aggregated, globose or subglobose, superficial or submerged. They are typically non-ostiolate, though some species develop an ostiole at maturity. Peridium is brown, composed of textura epidermoidea, and may appear semi-translucent or translucent. Asci are clavate to pyriform, eight-spored and evanescent. Ascospores are 1-celled, olivaceous brown at maturity, smooth-walled, fusiform in shape and possess an apical, oblique or lateral germ pore (
Sexual morph Cleistothecia 105–145 µm diam, non-ostiolate, globose, glabrous, black when mature, solitary to aggregated, mostly superficial, some submerged in PDA, aerial mycelium covered. Peridium brown, semi-translucent, membranous, textura epidermoidea. Asci subglobose to pyriform, hyaline when immature, eight-spored, 23.7–27.0 µm × 20.5–23.5 µm (x̄ = 25.5 × 22.5 µm, L/W ratio = 1.13, n = 10). Ascospores 1 celled, olivaceous brown when mature, subglobose to ellipsoidal, some smooth, apical germ pore, 9.3–11.7 µm × 6.7–9.0 µm (x̄ = 10.5 × 7.6 µm, L/W ratio = 1.39, n = 20). Asexual morph undetermined.
Colony reaching 50 mm diam with thick white aerial mycelium, fluffy, edge irregularly, wavy margin, and similar to reverse side of the colony.
TAIWAN • Guanshan Township, Taitung County, 23°02'12.8"N, 121°11'22.0"E, serpentine soil in rice field, 2nd November 2022, K.W Cheng, living culture
Two strains (
Maximum likelihood (ML) phylogenetic tree based on a concatenated dataset of ITS, LSU, rpb2, and tub2. In total, 26 strains representing 21 taxa were included in the concatenated dataset, with 2315 characters (ITS 531 bp, LSU 556 bp, rpb2 809 bp, and tub2 419 bp) including alignment gaps. The tree was rooted with Triangularia longicaudata CBS 252.57. MLB ≥ 70% and BPPs ≥ 0.95 were shown at each node; values lower than these thresholds are indicated by a hyphen (–). The scale bar indicates the number of estimated substitutions per site. The strains introduced in this study are in red and novel species are in bold. The ex-type strains are marked with T.
The genus Pseudorhypophila was proposed accommodate four Zopfiella species namely, Zopfiella mangenotii, Z. marina, Z. pilifera, and Z. submersa, which form a well-supported monophyletic clade within the family Navicularisporaceae in
TAIWAN • Guanshan Township, Taitung County, 23°02'14.8"N, 121°11'22.6"E, serpentine soil in rice field, 3rd November 2022, K.W. Cheng, holotype,
Named after Formosa, the former name of Taiwan, where the type specimen was collected.
Sexual morph Ascomata 342–504 µm diam, non-ostiolate, globose, dirty gray when immature, black when mature, submerged in PDA. Peridium multi-layered, brown, translucent, membranous, angular cells. Asci clavate to cylindrical, hyaline when immature, eight-spored, 74–111 µm × 14–21 µm (x̄ = 90.9 × 17.8 µm, L/W ratio = 5.13, n = 20). Ascospores two-celled; upper cell ellipsoidal to slightly fusiform, smooth, brown, multiple guttules, subapical germ pore, 18.3–24.6 µm × 8.8–12.5 µm (x̄ = 21.3 × 11.0 µm, L/W ratio = 1.95, n = 50), lower cell cylindrical with slightly tapering or rounded end, hyaline to pale brown, thin-walled, 4.0–8.0 µm × 3.1–5.8 µm (x̄ = 5.8 × 4.3 µm, L/W ratio = 1.36, n = 50). Asexual morph undetermined.
Colony exhibit rapid growth, reaching 80 mm diam with flat, sparse aerial mycelium, white, surface and margins slight smooth. The reverse exhibited blackish-gray center, with a gradient radiating outward into lighter gray tones.
In the present study, six Pseudorhypophila strains (
Morphology of Pseudorhypophila formosana
Maximum likelihood (ML) phylogenetic tree based on a concatenated dataset of ITS, LSU, and rpb2. In total, 23 strains representing 16 taxa were included in the concatenated dataset, with 2444 characters (ITS 569 bp, LSU 869 bp, and rpb2 1006 bp) including alignment gaps. The tree was rooted with Corylomyces selenosporus CBS 113930. MLB ≥ 70% and BPPs ≥ 0.95 were shown at each node; values lower than these thresholds are indicated by a hyphen (–). The scale bar indicates the number of estimated substitutions per site. The strains introduced in this study are in red and novel species are in bold. The ex-type strains are marked with T.
Trichosphaeriaceae G. Winter
The genus Phialoparvum was introduced by
TAIWAN • Guanshan Township, Taitung County, 23°02'14.8"N, 121°11'22.6"E, serpentine soil in rice field, 3rd November 2022, K.W. Cheng, holotype,
Named after Formosa, the former name of Taiwan, where the type specimen was collected.
Sexual morph undetermined. Asexual morph Conidia were observed on WA. Conidiophores solitary, hyaline, straight to slightly flexuous, arising from hyphal ropes or vegetative hyphae. Phialides subulate to ampulliform, hyaline, terminal or lateral, with conspicuous periclinal thickening and cylindrical collarette, 4–18 µm long. Mono-phialides or adelophialides predominant, few poly-phialides with two conidiogenous loci. Conidia cylindrical, hyaline, smooth, thick-walled, 1-celled, with 1 to 2 guttules, sometimes aggregated in clusters forming a slimy head, 3.6–4.6 µm × 1.7–2.4 µm (x̄ = 4.2 × 2.1 µm, L/W ratio = 2.04, n = 50).
Colony exhibit slow growth, reaching 30 mm diam with flat, creamy white, and velvety to powdery at the center, gradually thinning toward the edges with a smooth margin. The reverse side of the colony displayed similar characteristics.
In our multi-locus phylogenetic assessment, Phialoparvum formosanum forms a distinct branch with low statistical support, sister to the clade containing the ex-type strain of Ph. bifurcatum (CBS 299.70B). Despite the weak nodal support, these taxa exhibit substantial genetic divergence across three loci: ITS (440/455 bp, identities 96.7%, including 7 gaps), rpb2 (259/279 bp, identities 92.8%), and tef-1 (761/787 bp, identities 96.7%) (Fig.
Maximum likelihood (ML) phylogenetic tree based on a concatenated dataset of ITS, LSU, rpb2, and tef-1. In total, 26 strains representing 19 taxa were included in the concatenated dataset, with 2810 characters (ITS 477 bp, LSU 798 bp, rpb2 748 bp, and tef-1 787 bp) including alignment gaps. The tree was rooted with Sodiomyces alcalophilus CBS 114.92. MLB ≥ 70% and BPPs ≥ 0.95 were shown at each node; values lower than these thresholds are indicated by a hyphen (–). The scale bar indicates the number of estimated substitutions per site. The strains introduced in this study are in red and novel species are in bold. The ex-type strains are marked with T.
The present study provides the first comprehensive analysis of culturable fungal flora in serpentine-characterized paddy soils of eastern Taiwan. The results of the present study reveal a unique mycobiota dominated by Dothideomycetes (60% of isolates), with Westerdykella, Pyrenochaetopsis, and Talaromyces as the most frequently isolated genera. This contrasts with previous studies of serpentine soils, where Aspergillus, Cladosporium, and Penicillium were frequently isolated as dominant taxa (
Notably, in our study, 35% of the strains belong to Westerdykella. It is worth conducting further research to understand the role this genus plays in serpentine paddy fields. As mentioned earlier in this manuscript, we encountered several challenges in determining the species boundaries of Westerdykella dispersa. One possible reason for this is that only the ex-type strain (CBS 297.56) of W. dispersa, along with the strains identified as W. dispersa in this study, have complete sequence data for ITS, LSU, and tub2. In contrast, all other W. dispersa strains available in public databases are represented only by ITS and LSU sequences. This lack of complete genetic data may hinder accurate species delimitation and raises uncertainty about whether W. dispersa strains in Clades A and C represent distinct species or belong to the same species population. Additionally, most previous reports of W. dispersa lack detailed morphological descriptions, further complicating taxonomic resolution. Therefore, to clarify the species status of the two clades, it is essential to obtain the missing β-tubulin (tub2) sequences and conduct detailed morphological comparisons between the reference strains and the strains analyzed in this study. In a previous study, Westerdykella aquatica P71, a phylogenetically close relative of the strains isolated in this study, demonstrated mercury phytotoxicity mitigation in maize (
The genus Sarocladium is commonly associated with rice pathogens (
It is worth noting that while introducing Pseudorhypophila formosana in the present study, we observed that one of the strains,
In the present study, we proposed several novel species based on single strains obtained from serpentine soil (Dimorphiseta formosana, D. serpentinicola, Parasarocladium formosum, Phialoparvum formosanum, Poaceascoma serpentinum, Sarocladium formosanum, and S. serpentinicola). For instance, phylogenetic analyses revealed significant genetic divergence in Poaceascoma serpentinum, which showed less than 88% ITS sequence identity with its closest relatives, supporting its classification as a distinct species. However, relying on single strains for some descriptions highlights a common limitation in studies of rare environmental fungi (
A key limitation of this study is its focus on culturable fungi, which likely underestimates the total fungal diversity. Metagenomic approaches, such as ITS amplicon sequencing, could uncover non-culturable taxa and provide comprehensive insights into community functional profiles (
This research was funded by the National Science and Technology Council (formerly the Ministry of Science and Technology, MOST), Taiwan (grant nos. 110–2313–B–002–031, 111–2313–B–002–046, and 112–2313–B–002–027–MY3), and the Bureau of Animal and Plant Health Inspection and Quarantine, COA, Executive Yuan (grant nos. 111AS-5.3.3-BQ-B1 and 112AS-5.3.3-BQ-B1). The authors would like to acknowledge Dr. Zeng-Yei Hseu (Distinguished Professor, Department of Agricultural Chemistry; zyhseu@ntu.edu.tw) for his assistance in providing background knowledge on serpentine soil and guidance on soil sampling.
The authors have declared that no competing interests exist.
No ethical statement was reported.
All the fungal strains used in this study have been legally obtained, respecting the Convention on Biological Diversity (Rio Convention).
This research was funded by the National Science and Technology Council (former Ministry of Science and Technology, MOST), Taiwan (grant no. 110–2313–B–002–031–, 111–2313–B–002–046– and 112–2313–B–002–027–MY3). Bureau of Animal and Plant Health Inspection and Quarantine, COA, Executive. Yuan (grant no. 111AS-5.3.3-BQ-B1 and 112AS-5.3.3-BQ-B1).
Conceptualisation, HA and JIY; methodology, KWC and HA; software, KWC and HA; validation, KWC and HA; formal analysis, KWC and HA; investigation, KWC, JIY and HA; resources, KWC, JIY and HA; data curation, KWC and HA; writing-original draft preparation, KWC, MS, PS, AKand HA; writing-review and editing, KWC, JIY, MS, PS, AKand HA; visualisation, KWC and HA; supervision, project administration, HA and JIY; funding acquisition, HA and JIY. All authors have read and agreed to the published version of the manuscript.
Jiue-in Yang https://orcid.org/0000-0002-2254-4151
Piroonporn Srimongkol https://orcid.org/0000-0002-0319-1573
Marc Stadler https://orcid.org/0000-0002-7284-8671
Aphichart Karnchanatat https://orcid.org/0000-0002-6598-013X
Hiran A. Ariyawansa https://orcid.org/0000-0001-8526-7721
All of the data that support the findings of this study are available in the main text or Supplementary Information.
Supplementary tables S1–S4
Data type: xlsx
Explanation note: table S1. List of primers used in this study; table S2. Genbank accession numbers for the strains in this study (type strains in bold and new strains in red); table S3. The nucleotide substitution models used in the phylogenetic analyses. table S4. List of Westerdykella species morphology.
Supplementary figures S1–S5
Data type: docx
Explanation note: figure S1. Maximum likelihood (ML) phylogenetic tree based on tub2; figure S2. Maximum likelihood (ML) phylogenetic tree based on ITS; figure S3. Maximum likelihood (ML) phylogenetic tree based on ITS; figure S4. Maximum likelihood (ML) phylogenetic tree based on rpb2; figure S5. Maximum likelihood (ML) phylogenetic tree based on tef-1.